Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2161
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993...    29   3.0  
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190...    29   4.0  
08_02_0423 - 16946435-16946542,16946924-16947045,16947442-169475...    28   5.3  
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510...    28   7.0  
08_01_0116 - 934801-934949,935745-935854,935930-936055,936439-93...    27   9.3  
07_03_1064 + 23700662-23700787,23701709-23701870,23701983-237021...    27   9.3  

>02_01_0015 -
           98311-98412,98635-98707,98830-98921,99139-99230,
           99363-99432,99683-99781,100008-100093,100541-100655,
           100853-100918,101064-101143,101226-101301,101915-102151,
           102559-102590,102993-103047,103384-103498,104497-104579,
           105182-105232,105740-105802,105945-106010,106144-106279,
           106503-106591,106844-106964,107138-107340,107434-107820
          Length = 862

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 560 PQSRRCKPTGQ*IVIRLTIGRIGYRAPPREVQRH 459
           PQS RCKPT     + +TI   G   PP  V  H
Sbjct: 727 PQSERCKPT-----VEITIVEYGCAQPPHVVDDH 755


>02_01_0284 +
           1907249-1907665,1907816-1907859,1909508-1909546,
           1909791-1910112,1910803-1910892,1911541-1911609,
           1911969-1912074,1912146-1912234,1912349-1912461,
           1912555-1912657
          Length = 463

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 433 CVFPLSDNRWRCTSRGGARYPIRPIVSR 516
           C FP S N  RC       YP+ PI  R
Sbjct: 194 CYFPASTNSRRCRKFTTMAYPVSPIAGR 221


>08_02_0423 -
           16946435-16946542,16946924-16947045,16947442-16947504,
           16949707-16949844,16950062-16950170,16950610-16950934,
           16952482-16952645
          Length = 342

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 377 YGRDEIPRIVENISHKSSIVCFRYLTI 457
           YGRD   RI E ++H S   C R  T+
Sbjct: 42  YGRDRFARISEALAHPSCYSCIRVNTL 68


>07_03_1757 +
           29250163-29250349,29250612-29250813,29250898-29251008,
           29251112-29251160,29251247-29251353,29251439-29251942,
           29252486-29252614,29252865-29253161,29253274-29253720,
           29253828-29253893,29254109-29254169,29254314-29254463,
           29254555-29254689,29254791-29254818,29255430-29255479
          Length = 840

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -2

Query: 503 GRIGYRAPPREVQRHLLSDSGNTQYSTCVKYSRLF*GFRLDHKSVAEMARSQLVIGTTR 327
           G +GYR PP+++Q  +L    N  Y    +  R+    R     ++E+ + ++V+   R
Sbjct: 62  GGLGYRHPPKQIQ-EILDVPPNPSYLISPRRDRIMFLQRTAMPPLSELTKPEIVLSGIR 119


>08_01_0116 -
           934801-934949,935745-935854,935930-936055,936439-936526,
           936638-936758,936848-936926,937093-937156,937240-937445,
           937676-937715,937748-938009
          Length = 414

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 587 RLSWERQGFPQSRRCKPTGQ*IVIRLTIGRIGYRAPPREVQRHLLSD 447
           R +W  QG    R  K  G  +VIR  IGR    +P  EV+R + ++
Sbjct: 163 RQTWLPQGEHLQRLEKEKG--VVIRFVIGRSANPSPDSEVERAIAAE 207


>07_03_1064 +
           23700662-23700787,23701709-23701870,23701983-23702101,
           23703128-23703202,23704387-23704480,23704856-23704915,
           23705083-23705151,23705457-23705555,23706201-23706245,
           23706339-23706441,23706665-23706723
          Length = 336

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 245 QLKTVL-AL*NSQFASSASLQVIRSLFRCE*FRLLTDCVPSLQRFYGRDEIPRIVENISH 421
           +LK++L     S+  + A +Q+ +  FR    RLL  C+P L     R +  ++V N+  
Sbjct: 52  ELKSILYGNGESEPVTEACVQLTQEFFRENTLRLLIICLPKL-NLETRKDATQVVANLQR 110

Query: 422 K---SSIVCFRYL 451
           +   S IV   YL
Sbjct: 111 QQVSSKIVASEYL 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,075,752
Number of Sequences: 37544
Number of extensions: 286768
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)