Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2159
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    27   1.8  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   4.2  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   5.5  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    25   7.3  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   7.3  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   9.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.7  

>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 347 NYKNLIT*RWPMHKPCRSQKIKKYETSLSECG 252
           N K     RW   KP    K++KY   L++CG
Sbjct: 20  NLKTFEIYRWNPEKPEVKPKLQKYTVDLTKCG 51


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 595 KQLINHRLFTTILKPQRKKGKK 660
           ++++ + LF  ++KP+RKK KK
Sbjct: 663 EKILRYALFREVVKPKRKKHKK 684


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 360 YFMNNNKKTKETNRDININD*KRIKLTNEMI 452
           Y MN NKK K   +D      K+++  N++I
Sbjct: 25  YLMNKNKKRKPEKKDDKEKSSKKVQKKNKVI 55


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 604 INHRLFTTILKPQRKKGKK 660
           INH LF  IL PQ++ G K
Sbjct: 94  INHSLFWKILAPQKEGGGK 112


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 42  ISALRSQYS*RLPHPSNRNALLLHGRNRQVVPTRADSQEVLPVIR 176
           ++A   + S   PHP N   +LL G N Q  P+   +  +  +I+
Sbjct: 85  VTATAQELSTLNPHPENSKIVLLMGSNAQNDPSSPLNPYIRTIIK 129


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 339 KSYYLTLANAQTVPEPKNKEV 277
           KSYY T ++   VP P N++V
Sbjct: 506 KSYYNTRSSHSVVPNPTNQKV 526


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +3

Query: 204  ISGFYERAPTLSPGVSATLTQTCFILLYFLAPARFVHWPA 323
            +  FY +AP++ P    +L +   ++ +F++     +W A
Sbjct: 2120 LPAFYRQAPSIIPAFYRSLGKRNIVIWFFISQILINYWLA 2159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,070
Number of Sequences: 5004
Number of extensions: 54326
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)