Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2159
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0754 - 26935647-26937780,26940890-26941827                       30   1.9  
02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816           28   5.7  
02_05_0828 + 32057670-32057851,32060054-32060132,32060808-320608...    28   7.6  
02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149     28   7.6  

>11_06_0754 - 26935647-26937780,26940890-26941827
          Length = 1023

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +3

Query: 84  PSNRNALLLHGRNRQVVPTRADSQEVLPVIREALPLNLGEISGFYERAPTLSPGVSATLT 263
           P   + +LL  R+  ++P  A+  E +P+I+  L L +  ++G+Y  +P L    + T+ 
Sbjct: 16  PGRLDGVLL--RHGSILPKGAE--EEIPLIKRDLHLMISILNGYYSESPELEDATATTVA 71

Query: 264 Q 266
           +
Sbjct: 72  R 72


>02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816
          Length = 343

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 227 PHPVSRGVRHTHSNLFHTSLFFGSGTVCAL 316
           P  VS G+R ++ N  HTS+  GSG + +L
Sbjct: 104 PSAVSTGLRLSYENNEHTSITSGSGNMSSL 133


>02_05_0828 +
           32057670-32057851,32060054-32060132,32060808-32060869,
           32060993-32061092,32061169-32061210,32062057-32062098,
           32062189-32062343,32063609-32063636
          Length = 229

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = +3

Query: 210 GFYERAPTLSPGVSATLTQTCFILLYFLAPARFVHWPASSNKIFIVRRFNYFMNNNKKTK 389
           G +++A  LS      L      L+ F +  +  H+ ASS+   I+ ++N   NN  K +
Sbjct: 27  GLFKKAEELS-----VLCDADVALIVFSSTGKLSHF-ASSSMNEIIDKYNTHSNNLGKAE 80

Query: 390 ETNRDININD*KRIKLTNEM 449
           + + D+N+   K   L  ++
Sbjct: 81  QPSLDLNLEHSKYAHLNEQL 100


>02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149
          Length = 272

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 255 WRTPRETGWGHAR-RSRISHP 196
           W+ P +T WGH+R  S IS P
Sbjct: 200 WQAPHDTHWGHSRSSSSISMP 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,887,705
Number of Sequences: 37544
Number of extensions: 360570
Number of successful extensions: 861
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)