Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2159
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10118| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_55379| Best HMM Match : SAM_2 (HMM E-Value=3e-05)                   29   4.4  
SB_28322| Best HMM Match : Ion_trans (HMM E-Value=1.6e-41)             28   5.9  
SB_24417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_10118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -2

Query: 632 KMVVNKRWFINCLVSVKMHNFVGK*NKVSGRNFSGSSKKSHRKTLSQ*MT 483
           K ++NK W+     + K +   GK N  + R   G+ +  H + ++  +T
Sbjct: 327 KYMLNKEWYCPACGNDKNYTLAGKTNHTNTRKHQGNQRNQHTRNITDVIT 376


>SB_55379| Best HMM Match : SAM_2 (HMM E-Value=3e-05)
          Length = 1088

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 483 GHLLTESFSVTFFGGSREVTSRDFVSFSH-KIMHFHR 590
           G+   +S  +  FG S ++  R FVS S  K+ H HR
Sbjct: 190 GYKTLDSEEIETFGNSNKINKRTFVSSSKAKLSHHHR 226


>SB_28322| Best HMM Match : Ion_trans (HMM E-Value=1.6e-41)
          Length = 263

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 488 MTTILLRLYVI--TYHLICKFNSFLIIYVNVAISFLRFFIIIHKII 357
           MT I+L   V+  TYH   +  + +I YVN+A +F+  F  I K+I
Sbjct: 42  MTMIVLNAIVLMMTYHGATQEFNNIIEYVNMAFTFVFLFEAILKLI 87


>SB_24417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 258 LTQTCFILLYFLAPARFVHWPASSNKIF---IVRRFNYFMNNNKKTKETNRDININD*KR 428
           L Q   I+ YF+ PAR +H P    + F   + ++ N  M  N+   E +  + +     
Sbjct: 139 LPQDVIIMSYFIKPARVMHRPPDEAREFWEELEKKANLIMVVNEHDPELHTVLTLRGYDA 198

Query: 429 IKLTNEM 449
            +L +E+
Sbjct: 199 FQLQDEL 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,018,120
Number of Sequences: 59808
Number of extensions: 394404
Number of successful extensions: 1011
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)