Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2159
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U46753-8|AAA85764.1|  130|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81460-1|CAB03830.2|  215|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    29   3.9  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical
           protein F10G2.7 protein.
          Length = 674

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 483 GHLLTESFSVTFFGGSREVTSRDFVSFSHKIMHFHR 590
           GH   E  +V+    +REV  +D ++F   +  +HR
Sbjct: 453 GHGSMEMLAVSLLKNAREVPKKDIINFDQSVHPYHR 488


>U46753-8|AAA85764.1|  130|Caenorhabditis elegans Hypothetical
           protein C34F11.2 protein.
          Length = 130

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 543 SRDFVS--FSHKIMHFHRY*TVNKPPFIYHHFKTP 641
           SRD +S  F+H    F    TVNK PF+  H  TP
Sbjct: 38  SRDKLSDCFTHDFQFFGCGYTVNKAPFVEKHLATP 72


>Z81460-1|CAB03830.2|  215|Caenorhabditis elegans Hypothetical
           protein C04A11.1 protein.
          Length = 215

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +3

Query: 75  LPHPSNRNALLLHGRNRQVVPTRADSQEVLPVIREALPLNLGEISGFYERAPTLSPGVSA 254
           L     R ALL    NR      AD   VLP+    L   L       E  PT    +S 
Sbjct: 56  LKRQRRRQALLTAAINRAASTNEADRHNVLPIYITTLAHELNVFGAREEELPTYEEALSM 115

Query: 255 TLT 263
           + T
Sbjct: 116 SCT 118


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 25/101 (24%), Positives = 39/101 (38%)
 Frame = +3

Query: 354 FNYFMNNNKKTKETNRDININD*KRIKLTNEMICNDI*SQ*NGGHLLTESFSVTFFGGSR 533
           F   ++   K K TN     +  KR K   E+   DI    +      ES +        
Sbjct: 187 FENRLDGGNKRKNTNSREEPSS-KRSKNETEIAVLDILQVASQSENYNESTNSGRLQNEI 245

Query: 534 EVTSRDFVSFSHKIMHFHRY*TVNKPPFIYHHFKTPKEKRK 656
             +   F S S++  + H Y TVN PP     F  P ++++
Sbjct: 246 SSSIHQFPSTSYQNQYPHAYPTVNTPPIYAQQFPAPFDEKQ 286


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = -2

Query: 611 WFINCLVSVKMHNFVGK*NKVSGRNFSGSSKKSHRKTLSQ*MTTILLRLYVITYHLICKF 432
           W I+C++S+    F+   N+   R      +K H     Q      LR   + Y L+   
Sbjct: 201 WIISCVLSLMACVFLKLLNESFQREIKNPVRKRHFTISQQFQVKENLRAIRLGYRLVITV 260

Query: 431 NSFLIIYVNVAISFLRFFII 372
            S + +Y  + I+ L + II
Sbjct: 261 LSCIALY-GIGIAALNYEII 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,782
Number of Sequences: 27780
Number of extensions: 305814
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)