Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2159
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.0  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -2

Query: 467 LYVITYHLICKFNSFLIIYVNVAISFLRFFIIIHKIIKTAN 345
           L V+ ++L       + + +N+ +S   FF++I +II + +
Sbjct: 252 LSVLAFYLPADSGEKIALCINILLSQTMFFLLISEIIPSTS 292


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 603 NKPPFIYHHFKT 638
           +KPP  YH F+T
Sbjct: 162 DKPPLTYHQFQT 173


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 641 WGFKMVVNKRWFINCLVSVKM 579
           W F +     WFIN ++ ++M
Sbjct: 396 WSFIVSTILLWFINKIIPIRM 416


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 259 SVADTPGDRVGARS*KPDIS 200
           +  DTPGD    +   PDIS
Sbjct: 715 AAGDTPGDYTDLKLSNPDIS 734


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
 Frame = +3

Query: 279  LLYFLA---PARFVHWPASSNKIFIVRRF 356
            +LYF     P    HW   SN + + RRF
Sbjct: 1529 ILYFTIQYRPINEFHWTLVSNSVKMQRRF 1557


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
 Frame = +3

Query: 279  LLYFLA---PARFVHWPASSNKIFIVRRF 356
            +LYF     P    HW   SN + + RRF
Sbjct: 1525 ILYFTIQYRPINEFHWTLVSNSVKMQRRF 1553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,748
Number of Sequences: 438
Number of extensions: 3703
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)