Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2157
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0796 + 23224357-23224427,23225714-23225810,23226335-232271...    27   8.1  
07_01_0675 + 5055842-5055950,5056036-5056193,5056276-5057067,505...    27   8.1  

>12_02_0796 +
           23224357-23224427,23225714-23225810,23226335-23227146,
           23227593-23227619,23227620-23229624
          Length = 1003

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 134 FQRNLCFFLTVLQIWISETVLRTIKDIQQNIVNEK 238
           FQ  +C++   + +WI+     T  DI  N V E+
Sbjct: 820 FQMGMCYYFPRIPVWIASLENLTYLDINLNPVKEE 854


>07_01_0675 +
           5055842-5055950,5056036-5056193,5056276-5057067,
           5057544-5057760,5058280-5058449,5058986-5059630
          Length = 696

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 345 WNDCFTPEI-GSPIAPT*QNS*PPNSLKRGFKNTGKIFKKIFGPPSGXGAPIF 500
           W+ C    I GSP  P    +  P +L   ++++G     + G P G GAP F
Sbjct: 139 WDTCKAVRIPGSPFQPPRGGAAAP-TLTDVWQSSGDFCTALGGAPGGGGAPCF 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,120,112
Number of Sequences: 37544
Number of extensions: 207880
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)