Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2157
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   3.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.7  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 363 PEIGS-PIAPT*QNS*PPNSLKRGFKNTGKIFKKIFGPPSG 482
           PE G   +AP   ++  PN++K  FKNT  IF  +     G
Sbjct: 62  PEYGFFGVAPGTSSATNPNAMKTIFKNT--IFTNVASTSDG 100


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 407 LGILSSGSYWTAYFRSEAII 348
           L I S GS W    RSE+++
Sbjct: 33  LSIYSGGSDWRVAGRSESVV 52


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 370 ISGVKQSFQLNNFQFKRENIYYYYSVS 290
           ISG+K   Q+++  ++R+N  Y + VS
Sbjct: 351 ISGIKIIKQISSNIYERQNNEYIWIVS 377


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 379 GLPISGVKQSFQLNNFQ 329
           GLP   VKQSF  N  Q
Sbjct: 29  GLPGQEVKQSFLKNQLQ 45


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 379 GLPISGVKQSFQLNNFQ 329
           GLP   VKQSF  N  Q
Sbjct: 29  GLPGQEVKQSFLKNQLQ 45


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 379 GLPISGVKQSFQLNNFQ 329
           GLP   VKQSF  N  Q
Sbjct: 29  GLPGQEVKQSFLKNQLQ 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,252
Number of Sequences: 438
Number of extensions: 3325
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)