Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2156
         (471 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0001509DB6 Cluster: Protein kinase domain containing...    33   2.4  
UniRef50_A6DEH6 Cluster: Putative uncharacterized protein; n=1; ...    32   5.5  
UniRef50_Q9N451 Cluster: Putative uncharacterized protein; n=1; ...    32   5.5  
UniRef50_UPI0000162FBB Cluster: APUM10 (ARABIDOPSIS PUMILIO 10);...    31   9.7  
UniRef50_A5N384 Cluster: Putative uncharacterized protein; n=1; ...    31   9.7  

>UniRef50_UPI0001509DB6 Cluster: Protein kinase domain containing
           protein; n=1; Tetrahymena thermophila SB210|Rep: Protein
           kinase domain containing protein - Tetrahymena
           thermophila SB210
          Length = 825

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
 Frame = -2

Query: 278 VQIDAISG--YFRQSSLV-RDMGP*DLSTYIYINLIPLN-EQFLYIYII*ISETAPTIFI 111
           + ++ + G  Y  Q+ +V RD+ P ++  Y+Y   +P+   QF  IYI  I +   + F+
Sbjct: 122 IALEIVKGVSYLHQNGIVHRDLKPENI--YLYKKRVPIYYNQFQDIYIFKIGDFGLSKFL 179

Query: 110 KFSIQGISGAINRSSYDLFSEN 45
           K S   + G IN  + ++   N
Sbjct: 180 KSSNNSVVGTINYMAPEILENN 201


>UniRef50_A6DEH6 Cluster: Putative uncharacterized protein; n=1;
           Caminibacter mediatlanticus TB-2|Rep: Putative
           uncharacterized protein - Caminibacter mediatlanticus
           TB-2
          Length = 516

 Score = 32.3 bits (70), Expect = 5.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 272 IDAISGYFRQSSLVRDMGP*DLSTYIYINLIPLNEQ 165
           +D I+G F      +D+   DL TY Y+N+ P+N Q
Sbjct: 371 LDGINGGFGLGVEAKDITKNDLKTYYYLNIQPINSQ 406


>UniRef50_Q9N451 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 490

 Score = 32.3 bits (70), Expect = 5.5
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 23  LKTRIEQHFLKI----NRS*IDLSPPKSPVY*IL*KSLEPFPRFRLYIYTR 163
           L T  E H +++    N +  +L  PKSPV  I   SLEPF   R+ IY R
Sbjct: 60  LPTTDENHVVRVVCTSNATLFELLEPKSPVLSIKPDSLEPFGTTRMSIYMR 110


>UniRef50_UPI0000162FBB Cluster: APUM10 (ARABIDOPSIS PUMILIO 10);
           RNA binding; n=1; Arabidopsis thaliana|Rep: APUM10
           (ARABIDOPSIS PUMILIO 10); RNA binding - Arabidopsis
           thaliana
          Length = 528

 Score = 31.5 bits (68), Expect = 9.7
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 153 YIQELLV*RYKINVNVCR*VSRSHVSHERALPKITRNSINLHRDTFG 293
           Y  +L   +Y   V  C  ++   + HER + +I+R+S+ L +D FG
Sbjct: 365 YCAQLATHQYGCYVLQCSLINTVGLQHERLVAEISRDSLRLSQDPFG 411


>UniRef50_A5N384 Cluster: Putative uncharacterized protein; n=1;
           Clostridium kluyveri DSM 555|Rep: Putative
           uncharacterized protein - Clostridium kluyveri DSM 555
          Length = 216

 Score = 31.5 bits (68), Expect = 9.7
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -2

Query: 203 TYIYINLIPLNEQFLYIYII*ISETAPTIFIKFSIQGISGAINRSSYDL-FSENVVLF 33
           T +YI +   N +F YI+II I  T    FI ++   +  ++  S Y L FS+++ ++
Sbjct: 79  TILYIFIRKNNIKFYYIFIISIVLTLMYAFIMYNCNTVLQSVEESVYTLVFSQHIYIY 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,928,705
Number of Sequences: 1657284
Number of extensions: 11079325
Number of successful extensions: 19320
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19313
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)