Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2156
         (471 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   2.5  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   5.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.6  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 81  RPRNPLYTKFYENRWSRFRDSDYIYIQE 164
           +PR P  T+       +FRD  Y+ I E
Sbjct: 117 KPRTPFTTQQLLALEKKFRDKQYLSIAE 144


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 403 IAKVRWSRVLKVASFRNPLTE 341
           + + RW ++  +  FRN + E
Sbjct: 378 VCEHRWRQIFNMVGFRNAVQE 398


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 287 CVPVQIDAISGYFRQSSLVRDMG 219
           CV  + DA     R S LV D G
Sbjct: 473 CVAYKFDAAMMALRTSFLVNDFG 495


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 194 KCMSIGLKVPCLSRE 238
           KC+S+G++  C+  E
Sbjct: 247 KCLSVGMRPECVVPE 261


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,554
Number of Sequences: 336
Number of extensions: 2966
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)