Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2156
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    30   0.20 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    29   0.47 
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   4.4  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   4.4  

>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 67  LDRFIAPEIPCILNFMKIVGAVSEIQIIYIYKNCSFKGIRLM*M 198
           +++ I P++ C LN  ++ G V+   +IY Y  CS  G R++ M
Sbjct: 763 IEQSIEPDVACYLNHWEVAGCVAS-TLIYHY--CSMLGCRVIRM 803


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 179 PLNEQFLYIYII*ISETAPTIFIKFSIQGISGAINRSSYDLFSENVVLFVFSIINFI 9
           PL ++FL + +  I   APT+F    + G S    + +    +  +V F+FS+  FI
Sbjct: 561 PLLKRFLILILFFILNVAPTVF----VFGFSTEEQQRTTGRLTVAIVHFIFSVFTFI 613


>SPBC1703.07 |||ATP citrate synthase subunit 1
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = -2

Query: 92 ISGAINRSSYDLFSENVVLFVFSI 21
          ++G++++ SY+LFS++   FV+ +
Sbjct: 1  MAGSVDKPSYELFSKDTRAFVYGM 24


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 93  PLYTKFYENRWSRFRDSDYIYIQELLV*RYKI 188
           P Y  FY  +   F +SDY   Q+LL   Y+I
Sbjct: 194 PEYKLFYPIKSGVFNESDYASSQQLLADIYEI 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,641
Number of Sequences: 5004
Number of extensions: 47693
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)