Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2156
         (471 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70644-1|CAA49989.1|  847|Drosophila melanogaster histidine deca...    29   4.2  
AE013599-895|AAS64887.1|  869|Drosophila melanogaster CG1863-PB,...    27   9.7  

>X70644-1|CAA49989.1|  847|Drosophila melanogaster histidine
           decarboxylase protein.
          Length = 847

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 189 NVNVCR*VSRSHVSHERALPKITRNSINLHRDTFGGPLNPINVYLG 326
           ++ +C   S+SH+S   A+P   RN + +  D+   P+   NVY G
Sbjct: 668 HITLCAVPSQSHLSMPLAMPLPNRN-VTVSVDSLLNPVTTCNVYHG 712


>AE013599-895|AAS64887.1|  869|Drosophila melanogaster CG1863-PB,
           isoform B protein.
          Length = 869

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
 Frame = +3

Query: 210 VSRSHVSHERALPKITRNS-----INLHRD-TFGGP--LNPINVYLGL*WSISVRGFLND 365
           V+ S +S E +L  I  N      +   RD TF  P  L  ++   GL W   +RG LN+
Sbjct: 601 VNISSLSFENSLNGIEANKFGSCWLETDRDQTFTAPQKLASLDSQQGL-W---LRGQLNN 656

Query: 366 ATFNTLDHRTFAMGVPQGEKFVKFATNFI 452
            T   L++R++ +  P+  + V+FA   +
Sbjct: 657 HTLQDLENRSYRLNSPEHLQSVRFANPIV 685


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,204,066
Number of Sequences: 53049
Number of extensions: 525511
Number of successful extensions: 964
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1601407269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)