Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2156
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical ...    32   0.18 
AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine re...    30   0.96 
AC006795-5|AAK84611.1|  399|Caenorhabditis elegans Hypothetical ...    28   2.9  
AC006795-4|AAK84612.2|  430|Caenorhabditis elegans Hypothetical ...    27   6.8  

>AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.5 protein.
          Length = 490

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 23  LKTRIEQHFLKI----NRS*IDLSPPKSPVY*IL*KSLEPFPRFRLYIYTR 163
           L T  E H +++    N +  +L  PKSPV  I   SLEPF   R+ IY R
Sbjct: 60  LPTTDENHVVRVVCTSNATLFELLEPKSPVLSIKPDSLEPFGTTRMSIYMR 110


>AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 30 protein.
          Length = 305

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 180 YKINVNVCR*VSRSHVSHERALPKITRNSINLHRDTFGGPLNPINVYLGL*WS 338
           Y+  ++VC  ++R H S      +I  N+IN     F      + +YLGL WS
Sbjct: 46  YRFVLDVCFGLAREHNSFTIIFLQIKPNTINTDNLEFMSEHRNLLIYLGLPWS 98


>AC006795-5|AAK84611.1|  399|Caenorhabditis elegans Hypothetical
           protein Y50D4B.3 protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 333 WSISVRGFLN-DATFNTLDHRTFAMGVPQGEKFVKFATNFIKGV 461
           W  +    LN  +TF+    R FA+    GE + KF  NFI  +
Sbjct: 214 WVSTQDHLLNISSTFHDDSGRVFALSPKTGENYAKFTYNFINNL 257


>AC006795-4|AAK84612.2|  430|Caenorhabditis elegans Hypothetical
           protein Y50D4B.4 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 333 WSISVRGFLN-DATFNTLDHRTFAMGVPQGEKFVKFATNFI 452
           W  +    LN  +TF+    R FA+    GE + KF  NF+
Sbjct: 239 WVSTQDHLLNISSTFHDDSGRVFALSPKTGENYAKFTYNFL 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,930,348
Number of Sequences: 27780
Number of extensions: 267154
Number of successful extensions: 476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)