Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2156
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   2.9  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   3.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   3.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   3.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 135 RDSDYIYIQELLV*RYKIN 191
           R + Y+Y+ + L+ RY++N
Sbjct: 272 RGAQYLYLHQQLLARYELN 290


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 81  RPRNPLYTKFYENRWSRFRDSDYIYIQE 164
           +PR P  T+   +   +FR+  Y+ I E
Sbjct: 11  KPRTPFTTQQLLSLEKKFREKQYLTIAE 38


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 344 RNTPSKSQINVYWVKWSSKCVPVQIDAISGY 252
           R +PS + +N Y +K  +   P+++     Y
Sbjct: 226 RKSPSLTSLNAYLIKNQTITCPIKVSWRGNY 256


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 344 RNTPSKSQINVYWVKWSSKCVPVQIDAISGY 252
           R +PS + +N Y +K  +   P+++     Y
Sbjct: 277 RKSPSLTSLNAYLIKNQTITCPIKVSWRGNY 307


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 344 RNTPSKSQINVYWVKWSSKCVPVQIDAISGY 252
           R +PS + +N Y +K  +   P+++     Y
Sbjct: 226 RKSPSLTSLNAYLIKNQTITCPIKVSWRGNY 256


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 344 RNTPSKSQINVYWVKWSSKCVPVQI 270
           R +PS + +N Y +K  +   P+++
Sbjct: 226 RKSPSLTSLNAYLIKNQTITCPIKV 250


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -2

Query: 356  EPPHRNTPSKSQINVYWVKWSSKCVPVQIDAISGY 252
            +PPH  T +        + W S  +      I+GY
Sbjct: 1083 QPPHDTTCTTLTSQTIRISWMSPPLSAANGVITGY 1117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,886
Number of Sequences: 438
Number of extensions: 3388
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)