Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2155
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyce...    31   0.10 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.54 
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.95 
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    27   2.9  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   5.1  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    26   5.1  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   5.1  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   6.7  

>SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 187

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 239 IGIVSYVHLKQQADREKMHEGVVRDMERQQKRKIENLYLLEKQNE 373
           I +  Y+ LK    RE + +  V  +   QK + +NLYLLEK  E
Sbjct: 75  IDVQRYIQLKPPGTRESLLQSAV--VWEYQKSRNDNLYLLEKHGE 117


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 263  LKQQADREKMHEGVVRDMERQQKRKIENLYLLEKQNELTKKLKRELGS 406
            L Q+ D EK  +   ++  R++    EN++ LE+  E TKK   EL S
Sbjct: 1336 LIQRGDLEKALKDSEKNFLRKEAEMTENIHSLEEGKEETKKEIAELSS 1383


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 393 LFNFFVSSFCFSKRYKFSIFLFCCRSISLTTPSC 292
           L  + V +FCF +R+K +  L C  ++ L    C
Sbjct: 28  LATYLVETFCFFRRWKIACTLLCSITVILAYRMC 61


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 310 RYGTATKEKDRKFIPFGET 366
           +YG+  ++KD KF P GET
Sbjct: 141 KYGSLPEDKDLKFTPDGET 159


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +2

Query: 272  QADREKMHEGVVRDMERQQKRKIENLYLLEKQNELTKKLKRE 397
            Q +R+KM E V+   + QQK   +++ L + + + + K K++
Sbjct: 904  QEERQKMQEEVLEWRKSQQKASEDDMSLSDDEEKQSGKKKKK 945


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 314 MERQQKRKIENLYLLEKQNELTKKL 388
           M+++  +KIEN+YLL K+ +  K++
Sbjct: 1   MKKENWQKIENVYLLGKKIDKAKRM 25


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 320 RQQKRKIENLYLLEKQNELTKKLKRELGS 406
           R++KRK +  +L  ++NE +  LK+E+ S
Sbjct: 532 RREKRKSKKEFLKAQKNEASNNLKQEIVS 560


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 193 RHSTNCKAKATVSILLYKLFKTF 125
           RH +N  A+ T ++ L K FKT+
Sbjct: 98  RHKSNTFARLTAAVFLQKGFKTY 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,558
Number of Sequences: 5004
Number of extensions: 40377
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)