Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2155
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    30   1.7  
02_05_1350 - 35850020-35850073,35850430-35850519,35850963-358509...    27   9.1  

>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 248 VSYVHLKQQADREKMHEGVVRDME-RQQKRKIEN-LYLLEKQNELTK 382
           V  +HL Q+   EK+H+ V +  E   +  K++N +  L+KQ E TK
Sbjct: 258 VRQLHLAQEDQAEKVHDVVTKSQELESENSKLQNRITELKKQLETTK 304


>02_05_1350 -
           35850020-35850073,35850430-35850519,35850963-35850987,
           35851390-35851430,35852089-35852108,35852999-35853113,
           35853114-35853259,35853535-35853586
          Length = 180

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 318 SISLTTPSCIFSLSACCFR*TYDTIPIVIEQERPKTNLELEEDIR 184
           +I++  PS IFS+  C F        +VIE  R K     + +IR
Sbjct: 93  TITVNHPSYIFSVFVCMFEQQRKDFEVVIEDGRSKNMYVGQREIR 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,179,363
Number of Sequences: 37544
Number of extensions: 225249
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)