Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2155
         (621 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal ...    24   3.4  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   3.4  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   7.8  

>CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal RNA
           adenine dimethylaseprotein.
          Length = 375

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 449 KINTRK*TISLLLPNYLILFLTFLLVHFVS 360
           +I  R+     LLP+ L LF +F+  H+VS
Sbjct: 212 RIVPRRNLFDHLLPDNLSLFASFVTQHYVS 241


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 236  TIGIVSYVHLKQQADREKMHEGVVRDMERQQKR 334
            T  I SY   K +  +++ H+G    ME ++KR
Sbjct: 1190 TASIKSYGSHKNRPFKDESHKGSAETMEGEEKR 1222


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 343 FYLSLLLPFHISHYSFMHLF 284
           FYLS +L  H   + F+H+F
Sbjct: 925 FYLSQVLSGHAFVHEFLHVF 944


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,173
Number of Sequences: 2352
Number of extensions: 10275
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60214320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)