Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2155
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p...    28   6.2  
U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 260 HLKQQADREKMHEGVVRDMERQQKRKIENLYLLEKQNELTKKLKREL 400
           HL+QQ   +    G V  ++++        YLL+ + E   K++R+L
Sbjct: 514 HLRQQLAHQSSEAGSVGQLQQKLAESEHREYLLQLELERVMKMERDL 560


>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 260 HLKQQADREKMHEGVVRDMERQQKRKIENLYLLEKQNELTKKLKREL 400
           HL+QQ   +    G V  ++++        YLL+ + E   K++R+L
Sbjct: 514 HLRQQLAHQSSEAGSVGQLQQKLAESEHREYLLQLELERVMKMERDL 560


>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 384 FFVSSFCFSKRYKFSIFLFCCR-SISLTTPSCIFSLSACCFR*TYDTIPIVIEQ 226
           FF     FS  Y FS  L C   S   + P C  S S  C   T +   IVIE+
Sbjct: 22  FFCCQQIFSIFYNFSPGLSCDDPSFQFSKPKCKLSKSEICSELTANCSKIVIEE 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,079,112
Number of Sequences: 27780
Number of extensions: 223161
Number of successful extensions: 692
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)