Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2154
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...   106   3e-24
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    29   0.43 
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    27   2.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   4.0  
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    25   9.1  

>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score =  106 bits (254), Expect = 3e-24
 Identities = 52/96 (54%), Positives = 61/96 (63%)
 Frame = +3

Query: 168 IFSLYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVRAAMGIHTTGVSIVGGG 347
           I  LY + +  GE    G FL +TSPY WG LGIA  VA  ++ AA GI   G SI+GG 
Sbjct: 17  IVGLYMLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGA 76

Query: 348 VKAPTIKTNNLISVIFCEAVTIYCLITAIELSGMLD 455
           VKAP IKT NLIS+IFCE V IY LI AI  S  ++
Sbjct: 77  VKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSAKIN 112



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 493 QQNWMAGYVMFGAGLAVGLVNLFC 564
           + ++  G+ +F  G+ VGL NL C
Sbjct: 122 KSHYYTGFALFWGGITVGLCNLIC 145


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 120 YFLSYLFVLLVGLAIPIF-SLYYVLNGKGEQISLGWFLENTSPY 248
           Y L  L   L+G+    F ++YY L  +  + +L  FL+NT PY
Sbjct: 302 YALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPY 345


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/92 (21%), Positives = 39/92 (42%)
 Frame = +3

Query: 252 WGTLGIAFSVALSVVRAAMGIHTTGVSIVGGGVKAPTIKTNNLISVIFCEAVTIYCLITA 431
           +G +G+A S+AL      +G   T  ++  G    PT + +N + +       I C I  
Sbjct: 467 YGDVGVASSLALVTGLGNLGSVVTTYALYSGWPGDPTFRKSNDVCIALIGVSIIACGIEF 526

Query: 432 IELSGMLDKYSEPFTNVFRHAAELDGGIRDVR 527
           +       +++  F N   H  E +  + D++
Sbjct: 527 LLDKTGFGQFNASFNN-HDHEVEDEQEMTDIK 557


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 87   TKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLN 194
            + ++N+N+ +R ++S++   +  +A    SLY+ LN
Sbjct: 2008 SSFINENMYLRLWISHIASWIYAVASASGSLYFSLN 2043


>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 508 AGYVMFGAGLAVGLVNL 558
           +G++  GAGL+VGL  L
Sbjct: 87  SGFIQLGAGLSVGLAGL 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,662
Number of Sequences: 5004
Number of extensions: 57750
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)