Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2154
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 81 7e-16
01_06_1023 + 33890733-33891034,33891171-33891258,33894253-338945... 32 0.44
02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906... 30 1.3
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881 30 1.8
01_02_0040 - 10496431-10496463,10497278-10498708 30 1.8
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 29 2.3
12_02_0972 + 24956974-24957447 29 3.1
05_04_0172 + 18718661-18718930,18719410-18720252,18720326-187203... 29 3.1
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 3.1
03_05_0819 + 27948797-27948956,27948976-27949202 28 5.4
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 7.1
07_03_1616 - 28167872-28168303 28 7.1
04_04_0197 + 23499527-23500603 28 7.1
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 27 9.4
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 27 9.4
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 81.0 bits (191), Expect = 7e-16
Identities = 46/95 (48%), Positives = 58/95 (61%)
Frame = +3
Query: 228 LENTSPYMWGTLGIAFSVALSVVRAAMGIHTTGVSIVGGGVKAPTIKTNNLISVIFCEAV 407
L SPY + +GIA S+ +SV+ AA GI TG S++G +KAP I + NLISVIFCEAV
Sbjct: 12 LVQISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEAV 71
Query: 408 TIYCLITAIELSGMLDKYSEPFTNVFRHAAELDGG 512
IY +I AI L L+ S P T + H L G
Sbjct: 72 AIYGVIVAIILQTKLE--SVP-TALVHHPESLRAG 103
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 508 AGYVMFGAGLAVGLVNLFC 564
AGY +F +GL VG NL C
Sbjct: 102 AGYAIFASGLIVGFANLVC 120
>01_06_1023 +
33890733-33891034,33891171-33891258,33894253-33894522,
33894616-33894724,33894833-33894950,33895051-33895183,
33895306-33895493,33895566-33895752,33895797-33895841,
33895850-33895917,33896093-33896186,33896284-33896475,
33896656-33896736,33897363-33897425
Length = 645
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 250 CGVPSESPFPLPCPLSEQPWAS 315
CGVP ES FP+P ++PW S
Sbjct: 421 CGVPYESYFPMPASGRDKPWYS 442
>02_02_0335 +
9063749-9064216,9064846-9064890,9065351-9065470,
9066025-9067527
Length = 711
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -1
Query: 401 LAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEGTPHIRGSVLQEP 222
LAEDD D V+ D CF+ + H + D G + GN T + SV+ E
Sbjct: 491 LAEDDDDDSVASDLHCFELNMHGSSIQMHDHTGPRRSYTGNMDAPKRRTEYSH-SVVGES 549
Query: 221 S 219
S
Sbjct: 550 S 550
>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
Length = 697
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 401 LAEDDGDQIVSLDCRCFDTSSH 336
LAEDD D V+ D CF+ S H
Sbjct: 476 LAEDDNDNSVASDLHCFELSMH 497
>01_02_0040 - 10496431-10496463,10497278-10498708
Length = 487
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 329 DTSSVDAHGCSDNGQGNGKGDSEG 258
D ++ A G ++NG GNGKG+ G
Sbjct: 9 DAAAAAAAGAAENGYGNGKGNGNG 32
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -1
Query: 443 RELDSSDQTVNGDGLAEDDGDQIVSLDCRCF--DTSSHYADTSSVDAH 306
R L S Q DGL E +GD I S D F + H D ++H
Sbjct: 436 RPLTSGKQKQRNDGLGEINGDIITSKDTSIFYEEAKKHLTDILEYNSH 483
>12_02_0972 + 24956974-24957447
Length = 157
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 287 QGNGKGDSEGTPHIRGSVLQEPSQTYLLTLSIEDVVQ 177
+G GKG EG P G V + PS + E+ V+
Sbjct: 105 KGKGKGKHEGVPTANGGVGESPSSSVAAAAGSEEEVE 141
>05_04_0172 +
18718661-18718930,18719410-18720252,18720326-18720354,
18720439-18720529,18720625-18720779,18721552-18721662,
18722579-18722645
Length = 521
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 344 SSHYADTSSVDAHGCSDNGQGNGKGDSEGTPHIRGSVLQEPSQT 213
SS + ++S A G + +GNGKG G RG + + PS +
Sbjct: 14 SSSSSASASASASGGDEASKGNGKGQRRGRGRGRGLLQRLPSSS 57
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -1
Query: 452 QHTRELDSSDQTVNGDGLAEDDGD-----QIVSLDCRCFDTSSHYADTSSVDAHGCSDNG 288
++++E+D ++Q+ +G A+D D + + + S A + GCS+
Sbjct: 118 ENSKEIDGNNQSQEANGEADDINDVSANSENLKQESIANSVESDKAPEELKEVSGCSEEL 177
Query: 287 QGNGKGDSEGTPHIRGSV 234
+ GDSEG G++
Sbjct: 178 LNDENGDSEGLKDSHGAL 195
>03_05_0819 + 27948797-27948956,27948976-27949202
Length = 128
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -1
Query: 347 TSSHYADTSSVDAHGCSDNGQGNGKGD---SEGTPHIRGSVLQEPSQTYLLTLSIE 189
T++ +A +SS + S G G GKGD S G + E YL LS+E
Sbjct: 34 TAAPFASSSSSSSGAASSGGGGGGKGDGGASGGAEFFGEDGVVEDMDGYLNYLSLE 89
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = -1
Query: 356 CFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEGTPHIRGSVLQEPSQTYLLTLSIEDVVQ 177
C + HY D S + C D+ + T + + +++ Q L+ L+ E ++
Sbjct: 465 CESSIKHYTDAYSSGSLSCEDDSLPDSHALLHVTSRRKPNTMKKSDQEQLMGLASERIIP 524
Query: 176 RKYRDCK 156
++ D K
Sbjct: 525 QELNDWK 531
>07_03_1616 - 28167872-28168303
Length = 143
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 223 GSWRTLPRICGVPSESPFPLPCP 291
GS LPR+ GVPS SP P P P
Sbjct: 33 GSGALLPRLDGVPS-SPSPSPAP 54
>04_04_0197 + 23499527-23500603
Length = 358
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 213 SLGWFLENTSPYMWGTLGIAFSVALSVVRAAMGIHTTGVSIVGGGVKAP 359
S+ W + +P++ LG F V+ + AAMG + IV G + P
Sbjct: 130 SINWRYDGNTPFVLWLLGFCFQVSKDQLMAAMG-GGSEKGIVSGTITHP 177
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 223 GSWRTLPRICGVPSESPFPLPCPLSEQP 306
G+WR + I G+P+ F L C L E P
Sbjct: 183 GTWRWMLGIAGLPAFIQFILMCMLPESP 210
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 356 CFDTSSHYADTSSVDAHGCSDNGQGN 279
C D +Y D S GCS N +GN
Sbjct: 1862 CADKDGNYVDCSISPTAGCSYNSEGN 1887
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,161,537
Number of Sequences: 37544
Number of extensions: 409399
Number of successful extensions: 1420
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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