Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2154
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4012| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.084
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5) 34 0.11
SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31) 32 0.34
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) 32 0.45
SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79) 31 1.0
SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8) 31 1.0
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9) 31 1.0
SB_22414| Best HMM Match : Taeniidae_ag (HMM E-Value=5.1) 30 1.4
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 30 1.4
SB_33965| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_30818| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_26281| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_11533| Best HMM Match : Baculo_PEP_C (HMM E-Value=3.6) 29 3.2
SB_15136| Best HMM Match : Peptidase_S13 (HMM E-Value=0.27) 29 3.2
SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82) 29 4.2
SB_52019| Best HMM Match : Collagen (HMM E-Value=1.3) 29 4.2
SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05) 29 4.2
SB_57501| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_46127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_44584| Best HMM Match : DEAD_2 (HMM E-Value=0.12) 28 5.5
SB_28790| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_17095| Best HMM Match : GRP (HMM E-Value=1.6) 28 5.5
SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77) 28 5.5
SB_38675| Best HMM Match : HEAT (HMM E-Value=0.0016) 28 7.3
SB_22643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056) 28 7.3
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39) 28 7.3
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_5763| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.7
>SB_4012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 34.3 bits (75), Expect = 0.084
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = -1
Query: 416 VNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGC----SDNGQGNGKGDSEGTPH 249
VN DG + DGD + D D D + GC D+G G+G GD G
Sbjct: 81 VNDDGDGDGDGDGDIRGDGCVVDDDD---DDDDIQGDGCVVDDDDDGDGDGDGDIRGDDD 137
Query: 248 IRG 240
IRG
Sbjct: 138 IRG 140
Score = 31.5 bits (68), Expect = 0.59
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 458 FIQHTRELDS-SDQTVNGDGLAEDDGDQIVSLD-CRCFDTSSHYADTSSVDAHGCSDNGQ 285
F+ +EL + + +GDG + DGD + D C D D + GC N
Sbjct: 31 FVNSGKELQTLHEDDDDGDGNDDCDGDDDIRGDGCVVVD------DDDDIRGDGCVVNDD 84
Query: 284 GNGKGDSEGTPHIRGSVLQE 225
G+G GD +G G V+ +
Sbjct: 85 GDGDGDGDGDIRGDGCVVDD 104
>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
Length = 634
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -1
Query: 434 DSSDQTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
+ D +GDG +D+GD D D + GC DNG+G+G GD +G
Sbjct: 581 NGGDGGCDGDGFGDDNGDGFG-------DGDGDGCDDGDGEGEGC-DNGEGDGDGDGDG 631
>SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)
Length = 646
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 437 LDSSDQTVNGDGL-AEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSE 261
L +SD+ +G L AE G C+C SSH +D G D + NG + +
Sbjct: 181 LGTSDEEEDGAELVAEGKGRSTPVTRCKCSSFSSHRCPFPGIDIEGADDEMESNGDEEQQ 240
>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
Length = 509
Score = 31.9 bits (69), Expect = 0.45
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -1
Query: 413 NGDGLA-EDDGDQIVSLDCRCFDTSSHYADT--SSVDAHGCSDNGQGNGKGDSEGT 255
+GDG +DDG S D D S Y D S D GC D+G N GD +G+
Sbjct: 393 DGDGGGCDDDGGDDSSCDDDGGDDSGCYDDGNGSVFDDEGCDDSGCVNDGGDGDGS 448
>SB_41234| Best HMM Match : CASP_C (HMM E-Value=0.79)
Length = 296
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -1
Query: 416 VNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
VNGDG + DGD D D D G D+G G+G GD +G
Sbjct: 208 VNGDGNGDGDGDGNGDGDGDDGDDDGDGGGDDDGDGDGV-DDGDGDGDGDCDG 259
>SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8)
Length = 314
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 407 DGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
DG +DDGD DC D GC +G G+G GD +G
Sbjct: 19 DGDGDDDGDDDGGGDCG--GDGDGDGDGDGDGDGGCDGDGDGDGDGDDDG 66
>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
Length = 560
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -1
Query: 434 DSSDQTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSE 261
D+ D+ +N D A DD D V+ D + AD ++ G D+ G+ D E
Sbjct: 221 DADDENINSDDDAADDADYYVNSDADDDINGDYDADDEDING-GDDDDINGDNDADDE 277
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -1
Query: 434 DSSDQTVNGDG-LAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
D+ D+ +N D A+DD D V+ D D + D D +G D+ N D+
Sbjct: 273 DADDENINSDNDAADDDADDYVNSDADDEDINIGDDDADDDDIYG-DDDDDINSDDDAAD 331
Query: 257 TPHIRG 240
+I G
Sbjct: 332 DDNING 337
>SB_22414| Best HMM Match : Taeniidae_ag (HMM E-Value=5.1)
Length = 249
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -1
Query: 419 TVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
TV DG + DGD D AD + DA GC +G G+G GD +G
Sbjct: 24 TVGCDGDGDGDGDGDGDGD----GDGDADADADA-DADGCDGDGDGDGDGDGDG 72
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -1
Query: 563 QNRFTKPTASPAPNITYPAIQFCCMTEHISKWFRIF-IQHTRELDSSDQTVNGDGLAEDD 387
+N+F ++ P P + P ++F T+ K F + T+ + +DQ + +D
Sbjct: 216 ENKFDVKSSVPIPKLVTPELKFQSYTDESEKSRGNFTVSRTQGNEENDQEFEPMEIHDDS 275
Query: 386 GDQIVSLD 363
GD+ V D
Sbjct: 276 GDEDVDSD 283
>SB_33965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 350 DTSSHYADTSSVDAHGCSDNGQGNGKGDSEGTPHIRG 240
D S +T +GC+D+G +G DS G + +G
Sbjct: 107 DHSDQRDNTIGSSRYGCNDDGDSDGDSDSHGNDYHKG 143
>SB_30818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = -1
Query: 434 DSSDQTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
D S + GD +DD D + D C D S D S D + D+ N D G
Sbjct: 21 DDSGEDDCGDNSGDDDSDDDIGDDDSCDDNS---RDDDSGDYYSVDDDSDDNSIDDDSG 76
>SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 494 CMTEHISKWFRIFIQH-TRELDSSDQTVNGDGLAEDDGD 381
C+ H SK I +H TR++D D +GDG + DGD
Sbjct: 690 CLAIHPSK--NIIRRHLTRDVDDDDDDDDGDGDGDGDGD 726
>SB_26281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/82 (31%), Positives = 34/82 (41%)
Frame = +1
Query: 37 NRAKKGRPFRD*RVKTAPNTLTKISR*DTS*VTYSCSWWDLQSRYFRCTTSSMERVSR*V 216
N+A+ G PF + +AP L S T+ VT C+ S+Y C
Sbjct: 77 NKARCGYPFYSEPISSAPKVLELKSEEKTAMVTTGCTIDLAASQYLHC------------ 124
Query: 217 WDGSWRTLPRICGVPSESPFPL 282
DG+W LP SE PF L
Sbjct: 125 -DGTWAPLPL---QSSEKPFKL 142
>SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 293 CQSSHGHPHYWCQHSGRRCQSTYN 364
CQ+ G Y C+H G+R +YN
Sbjct: 185 CQTCTGGKSYTCEHCGKRFNKSYN 208
>SB_11533| Best HMM Match : Baculo_PEP_C (HMM E-Value=3.6)
Length = 491
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -1
Query: 434 DSSDQTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
D D +G+G +DD D D D D D +G D+ G+G GD +G
Sbjct: 393 DDDDDDGDGNG-GDDDDDDDGDGDGDDGDGDDGDNDDDDGDGNGDDDDDDGDGDGDGDG 450
>SB_15136| Best HMM Match : Peptidase_S13 (HMM E-Value=0.27)
Length = 638
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 434 DSSDQTV-NGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
DS D V +GDG E +GD + D A D G G G+G GDS+G
Sbjct: 527 DSCDDDVGDGDGGGEGNGDGYEDVG----DGDDDGAGDGGGDGDGDGYEGVGDGNGDSDG 582
>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
Length = 1642
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 455 IQHTRELDSSDQTVNGDGLAEDDGDQIVSLDCR 357
I LDS+D +N DG +D D ++S + R
Sbjct: 1245 IDQANTLDSADTGINDDGFGKDPNDDMMSANRR 1277
>SB_52019| Best HMM Match : Collagen (HMM E-Value=1.3)
Length = 99
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/58 (31%), Positives = 22/58 (37%)
Frame = -1
Query: 434 DSSDQTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSE 261
D D +GDG DDGD +D D D G D+G G GD +
Sbjct: 14 DDGDDGDDGDGDNGDDGDD-GDVDDNVCDGDGDDGDDGDNVCDGDGDDGDGGDDGDDD 70
>SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)
Length = 494
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 440 ELDSSDQTVNGDGLAEDDGDQIVSLDCR-CFDTSSHYADTSSVDAHGCSDNGQGNGKGDS 264
+ ++ D+ + DG DD D+ +D CF + D S D GC N N KG+
Sbjct: 272 DYNNDDEENDDDGNDSDDDDERNDVDNEECF-VAEICKDKSMQDVSGCIVNNSPNVKGNK 330
Query: 263 E 261
+
Sbjct: 331 Q 331
>SB_57501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -1
Query: 440 ELDSSDQTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSE 261
++D D N D +DD D + D D D D++ DNG GN D +
Sbjct: 72 DVDDDDDDDNDDD-KDDDDDDVDDDDDDNDDDDDDSDDDDDNDSNDDDDNGDGNDDDDDD 130
>SB_46127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = -1
Query: 425 DQTVNGDGLAEDDGDQIVSLDCR--CFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEGTP 252
D N + +DD D V D D + D + D + DNG + GD G P
Sbjct: 136 DDDDNDSAVDDDDNDSAVDDDDNDSAVDDYKNGYDDNGDDGYDDDDNGSDDDDGDDRG-P 194
Query: 251 HIR 243
++R
Sbjct: 195 YVR 197
>SB_44584| Best HMM Match : DEAD_2 (HMM E-Value=0.12)
Length = 540
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -1
Query: 422 QTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
+T+N E G QI + + + + Y D + D G +D G G G G G
Sbjct: 37 ETINNIHSVEVSGAQIPIQNSKATNPPNLYVDNDNDDGGGDTDGGGGCGGGGGGG 91
>SB_28790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 395 EDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
++DGD +D C D D GC +G+GNG GD +G
Sbjct: 9 DNDGDDDNDVDGDC---GGDGGDGVGGDG-GCCGDGEGNGDGDGDG 50
>SB_17095| Best HMM Match : GRP (HMM E-Value=1.6)
Length = 203
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = -1
Query: 407 DGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
DG DD D I D + D D DN G GKG+ +G
Sbjct: 75 DGADNDDDDDIDRTDNDGCGNDVDHDDNGDYDDCIDDDNNDGGGKGNGDG 124
>SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77)
Length = 1002
Score = 28.3 bits (60), Expect = 5.5
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Frame = -1
Query: 488 TEHISKWFRIFIQHTRELD-SSDQTVNG--DGLAEDDGDQIVSLDCRCFDTSSHYADTSS 318
T + ++ ++ Q R SSD+T++ D D D RC+D+ HY S
Sbjct: 841 TAELVQYLKLIAQRRRSTYCSSDETLDSFDDESVIQTPDSDQKPDHRCYDSRLHY---SE 897
Query: 317 VDAHGCSDNGQGNGKGDSEGTPHIRGSVLQEPSQ--TYLLTLSIEDVVQRKYRDCK 156
D D+ + + + E +PH + + + T+L LS++ +K R K
Sbjct: 898 EDYFSDEDDDEFDDFDEEEESPHNFSATMLIFLRILTFLNCLSVQRETSKKTRGVK 953
>SB_38675| Best HMM Match : HEAT (HMM E-Value=0.0016)
Length = 606
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 446 TRELDSSDQTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGC-SDNGQGNGKG 270
T L ++ ++ D + Q+ + ++S + + + HG +DN QGNG G
Sbjct: 285 TSSLSANQSSMTSDSQSSTRDYQVGITESYQGNSSGNLQGNGNGNPHGNGNDNLQGNGNG 344
Query: 269 DSEGTPHIRGSVLQEPSQT 213
+ +G +++ + +P T
Sbjct: 345 NQQGNGNLQWNGNGKPQAT 363
>SB_22643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 229 WRTLPRICGVPSESPFPLPCPLSEQPWASTLL 324
WR ++ +PS +P PL CP +++ S +L
Sbjct: 21 WRHTKKMSTIPSYTPKPLICPSNKELHPSAML 52
>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = -1
Query: 434 DSSDQTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
D D +GDG + DGD D D + G +G G+G GD +G
Sbjct: 763 DDDDDDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGDGAGAGDGGGDGDGDGDGDGDGDG 821
>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
Length = 508
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -1
Query: 434 DSSDQTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEGT 255
+ D +GDG + DGD D D + D D+ G+G DS+GT
Sbjct: 422 NDDDSDGDGDGDYDSDGDGDYDSDGDGDDDDNGDGDVDGGGDGDDDDDSDGDGDDDSDGT 481
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 96 LNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQ 209
+ Q + ++Y+F LLV +IP + VLN GEQ
Sbjct: 424 IEQIMDQEVLMTYIFHLLVIASIPYVLVLQVLNLSGEQ 461
>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
Length = 1024
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -1
Query: 446 TRELDSSDQTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGD 267
+R +D D T +G G +D+GD+ D D H D + D DNG G G D
Sbjct: 58 SRGVDGDDYTDDGSGNDDDNGDENYDDDGGSDD--DHDDDNGNYD----DDNGVGVGNYD 111
Query: 266 SE 261
+
Sbjct: 112 DD 113
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 356 CFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEG 258
C + S D +VD +G G+G GD +G
Sbjct: 602 CSNGDSDSVDGDNVDGDSVDGDGDGDGDGDGDG 634
>SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 674
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = -1
Query: 425 DQTVNGDGLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQG--NGKGDSEGTP 252
D G + DGD + D D Y+D + GC D G G GD G
Sbjct: 24 DDNGGGADVGGSDGDD--NDDDNDEDDGDDYSDDNIGGDGGCGDGGGGEDTDSGDVSGDI 81
Query: 251 HIRGSVLQEPSQTYLLTLSIEDVV 180
+ + +E Y+L ++ ++V
Sbjct: 82 IVDSPLDREFKNVYILNVTAANIV 105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,684,065
Number of Sequences: 59808
Number of extensions: 463353
Number of successful extensions: 2067
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1998
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -