Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2154
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 119 2e-27
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 119 2e-27
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass... 31 0.69
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass... 31 0.69
AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin reu... 28 4.9
AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of... 28 4.9
AF016449-13|AAG24003.1| 350|Caenorhabditis elegans Serpentine r... 28 6.4
Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 27 8.5
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 27 8.5
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 27 8.5
U80023-15|AAG24046.1| 343|Caenorhabditis elegans Serpentine rec... 27 8.5
AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 119 bits (287), Expect = 2e-27
Identities = 53/95 (55%), Positives = 72/95 (75%)
Frame = +3
Query: 177 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVRAAMGIHTTGVSIVGGGVKA 356
L+Y+L+G+G + +GWFL +TSP+MW LGI FS++LSV+ A GI TTG SI+GGGVKA
Sbjct: 26 LFYMLSGQGHRFDIGWFLTSTSPHMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKA 85
Query: 357 PTIKTNNLISVIFCEAVTIYCLITAIELSGMLDKY 461
P I+T NL+S+IFCEAV I+ +I A G L ++
Sbjct: 86 PRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEF 120
Score = 35.1 bits (77), Expect = 0.042
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 484 SVMQQNWMAGYVMFGAGLAVGLVNLFC 564
+++ +N +GY++FG GL VGL NL C
Sbjct: 133 AILARNLASGYMIFGGGLTVGLSNLVC 159
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 119 bits (287), Expect = 2e-27
Identities = 53/95 (55%), Positives = 72/95 (75%)
Frame = +3
Query: 177 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVRAAMGIHTTGVSIVGGGVKA 356
L+Y+L+G+G + +GWFL +TSP+MW LGI FS++LSV+ A GI TTG SI+GGGVKA
Sbjct: 26 LFYMLSGQGHRFDIGWFLTSTSPHMWAGLGIGFSLSLSVLGAGWGIFTTGSSILGGGVKA 85
Query: 357 PTIKTNNLISVIFCEAVTIYCLITAIELSGMLDKY 461
P I+T NL+S+IFCEAV I+ +I A G L ++
Sbjct: 86 PRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEF 120
Score = 35.1 bits (77), Expect = 0.042
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 484 SVMQQNWMAGYVMFGAGLAVGLVNLFC 564
+++ +N +GY++FG GL VGL NL C
Sbjct: 133 AILARNLASGYMIFGGGLTVGLSNLVC 159
>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform a protein.
Length = 1020
Score = 31.1 bits (67), Expect = 0.69
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = -1
Query: 455 IQHTRELDSSDQTVNGDGLAEDDGDQI-----VSLDCRCFDTSSHYADTSSV 315
+QHT + SS T +GD DD + SLD + TSS + +T+SV
Sbjct: 229 VQHTNSVGSSIGTTSGDSEISDDDQKSWSPKNESLDYQPASTSSEFTETTSV 280
>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform b protein.
Length = 1061
Score = 31.1 bits (67), Expect = 0.69
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = -1
Query: 455 IQHTRELDSSDQTVNGDGLAEDDGDQI-----VSLDCRCFDTSSHYADTSSV 315
+QHT + SS T +GD DD + SLD + TSS + +T+SV
Sbjct: 270 VQHTNSVGSSIGTTSGDSEISDDDQKSWSPKNESLDYQPASTSSEFTETTSV 321
>AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin
reuptake transporter protein.
Length = 671
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 126 LSYLFVLLVGLAIPIFSLYYVLNGKG 203
L + LL LAIP+F++ Y+L+G G
Sbjct: 602 LGWFLRLLSVLAIPVFAIIYLLSGTG 627
>AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 5 protein.
Length = 671
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 126 LSYLFVLLVGLAIPIFSLYYVLNGKG 203
L + LL LAIP+F++ Y+L+G G
Sbjct: 602 LGWFLRLLSVLAIPVFAIIYLLSGTG 627
>AF016449-13|AAG24003.1| 350|Caenorhabditis elegans Serpentine
receptor, class t protein8 protein.
Length = 350
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 120 YFLSYLFVLLVGLAIPIFSLYYVLN 194
YFL +L VL + L IP++ L VL+
Sbjct: 52 YFLCFLAVLKLNLKIPVYQLMLVLS 76
>Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical
protein W05H5.5 protein.
Length = 358
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 93 YLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVL 191
Y++ LK+R F L++L +IP+F L+YVL
Sbjct: 50 YVHVTLKIRLFHRNLYIL----SIPVFFLWYVL 78
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 413 NGDGLAEDDGDQIVSLDCRCFDTSSHYA-DTSSVDAHGCSDNGQGNGKGDSEG 258
NGDG GD + ++ D + D + + G + NG G+G D+ G
Sbjct: 492 NGDGNGRPKGDGNIKINIHSPDDNDLLEKDENGPNGKGGAGNGNGDGDKDNNG 544
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 413 NGDGLAEDDGDQIVSLDCRCFDTSSHYA-DTSSVDAHGCSDNGQGNGKGDSEG 258
NGDG GD + ++ D + D + + G + NG G+G D+ G
Sbjct: 492 NGDGNGRPKGDGNIKINIHSPDDNDLLEKDENGPNGKGGAGNGNGDGDKDNNG 544
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 426 TAIELSGMLDKYSEPFTNVFRHAAELD 506
+++E S +++ + P FRHA++LD
Sbjct: 158 SSLESSDLINSHFSPIAKTFRHASDLD 184
>U80023-15|AAG24046.1| 343|Caenorhabditis elegans Serpentine
receptor, class h protein200 protein.
Length = 343
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 78 KNSTKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVL 191
KN+ NL+ ++F++ L L+V L F +YVL
Sbjct: 229 KNTMSRRTFNLQRKFFITLLIQLIVPLVFFFFPSFYVL 266
>AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical
protein VC5.2 protein.
Length = 588
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 404 GLAEDDGDQIVSLDCRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEGT 255
G A+DD D++++L CR F + H D + D D G G S T
Sbjct: 350 GDAKDDADEVITLGCRKF-IAHHLGDQVAED---IEDLRVAGGTGSSHHT 395
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,065,416
Number of Sequences: 27780
Number of extensions: 335873
Number of successful extensions: 1127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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