Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2153
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   3.0  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   6.9  

>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 494 LRKAETLLSDSLKNVKDFHYILLL 423
           +++  TLL++S  N   FHYI+LL
Sbjct: 114 IKELYTLLNESSNNTWHFHYIVLL 137


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 16  YNILILKSYMKGELIFM*NVDKDEFKKSNIFIAHNKHL 129
           Y +L  K+Y K E I +   D  +     + IA+ KHL
Sbjct: 583 YGLLRTKNYEKNENILIYEADDVKINFPQLIIAYLKHL 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,600
Number of Sequences: 5004
Number of extensions: 45519
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)