Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2153
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)                    27   9.7  

>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
          Length = 1234

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = -1

Query: 268 KLSQESTFLH*DQNNK*LLMVIELHICINQEIDISGHLLLDSFAC*INVYYAR*IYCFF* 89
           +L   ST ++ +Q +   +  ++LH+C N ++ +  +    +     N  Y R +     
Sbjct: 389 RLCANSTAMY-EQYSSRYVRTVQLHLCANSQLHLCANSTTPAMCEQYNSIYVRTVQ---- 443

Query: 88  THLCLHST*ILVRLSYN 38
            HLC +ST   +   YN
Sbjct: 444 LHLCANSTTPFMGRQYN 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,629,482
Number of Sequences: 59808
Number of extensions: 298118
Number of successful extensions: 494
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)