Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2153
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-5|AAA83168.1|  190|Caenorhabditis elegans Major sperm pro...    28   6.4  
Z83116-1|CAB05559.2|  480|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF101307-4|AAC69211.1|  316|Caenorhabditis elegans Hypothetical ...    27   8.5  

>U41533-5|AAA83168.1|  190|Caenorhabditis elegans Major sperm
           protein protein 32 protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 175 FLDLCKYVVL*PLTVICCSGLNAKM*ILVIIFCAARQSKHTYRVK 309
           F  +C+Y V+ P    C +G+        I+F A    KHTY +K
Sbjct: 53  FGGICRYAVM-PKNSECRTGMIQTQPGTKIVFNAPYDDKHTYHIK 96


>Z83116-1|CAB05559.2|  480|Caenorhabditis elegans Hypothetical
           protein M01B2.1 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 330 THVSTIMFYSVCMFRLSSRTENYHKNLH 247
           T ++ +  Y VC+F L S  E+ +K LH
Sbjct: 372 TEMTDVWSYGVCLFELFSLGESPYKKLH 399


>AF101307-4|AAC69211.1|  316|Caenorhabditis elegans Hypothetical
           protein F41H8.1 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 211 LTVICCSGLNAKM*ILVIIFCAARQSKHTYRVKH 312
           L  +CC+G+N  + +L +   A R++KH   V +
Sbjct: 25  LLQVCCAGINGFIIVLFVKLPALRRNKHLRLVSY 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,991,530
Number of Sequences: 27780
Number of extensions: 248424
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)