Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2152
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28) 30 1.7
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39) 29 3.9
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 28 5.1
SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9) 28 5.1
SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_23022| Best HMM Match : CUB (HMM E-Value=0) 27 9.0
SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0) 27 9.0
SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3) 27 9.0
SB_7889| Best HMM Match : VWC (HMM E-Value=2.6) 27 9.0
>SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +3
Query: 195 VKLHVIADKEEGWLQVVSSMVNVIPLDNPLGPSAITIVFDDCPLPSRDSVIKLTKLFRLS 374
+K+ + + EG +++ N + L ++I V D P+P+R+S+ T RL+
Sbjct: 847 IKVENVVESVEGLHKLLRRARNNLILREEKSKASIQSVVADVPIPTRESIASPTTQKRLA 906
Query: 375 RQR 383
RQ+
Sbjct: 907 RQK 909
>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
Length = 1282
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +3
Query: 339 SVIKLTKLFRLSRQRALSNALDVKMKRNMCVVLGCIAEKLAGP--NSVAVLTEETL-DFL 509
+VI L+K +S+ +S LD+ ++CV + ++ A P S + T+E DF
Sbjct: 390 AVIDLSKSLDISKNLDISKNLDITKSLDLCVNVAQQSDNAASPEEKSTSFYTQERKEDFE 449
Query: 510 LAFLDTNFEPV 542
L L+ N + V
Sbjct: 450 LLTLEENADTV 460
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 29.9 bits (64), Expect = 1.7
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = -1
Query: 595 SGGVSELSQGRLVRRALCTGSKLVSRNARRKSSVSSVSTATLFGPASFSAIHPRTTHILR 416
SGG S + G RA TGS + RRKSS S S+ T+F S I ++ R
Sbjct: 2348 SGGSSAENSGVRSDRASSTGS---GSDRRRKSSCDSASSDTVF----TSNIGGNPDYLKR 2400
Query: 415 F---IFTSRAFESARCLDSRNSFVSFMTESLEGSGQSSKTMVIADG 287
F I + + SA ++ +S + + S +G SK+ I DG
Sbjct: 2401 FEMRISRTSSSGSAGEVEPDSSRLRADSGSASSNGYHSKSQSILDG 2446
>SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)
Length = 788
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 545 MHGLEVGVQKCKEKVERLLGEYSDAVRARQFLGNTPEDNAHIAFHLHVEG 396
MH G+ K+++ L G RAR +G PE NA + F+ G
Sbjct: 1 MHNYPSGITGNKKQMSALTGNKKRTSRARDSVGVIPEGNA-VTFYCTASG 49
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 370 SRNSFVSFMTESLEGSGQSSKTMVIADGPSGLSSGITLTIDETTCS-HPSSLSAITC 203
S S ++ ++ S G+G + G S SG +TID T C+ + ++ + ITC
Sbjct: 1706 SMTSEITSVSPSRGGTGGGVTLTISGSGFSTTPSGNKVTIDGTVCTVNSATATTITC 1762
>SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)
Length = 493
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 106 NYSTTKLILKVLKAFMQCNF*DSHILNKCP 17
NYS ILKVLK F + + D H+ +CP
Sbjct: 28 NYSLQMHILKVLKLFEKQSRTDRHVNCRCP 57
>SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +2
Query: 347 KANETVPAVEATCTLERPRREDETQYVRCPRVYCRETGGPEQRRCTHRG 493
K N V + C +E D R P C E GPE RCT G
Sbjct: 113 KLNRDVGNDDPKCIIETQEGNDS----RGPERTCTEPPGPETERCTTAG 157
>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
Length = 1307
Score = 27.5 bits (58), Expect = 9.0
Identities = 31/118 (26%), Positives = 44/118 (37%)
Frame = -1
Query: 517 NARRKSSVSSVSTATLFGPASFSAIHPRTTHILRFIFTSRAFESARCLDSRNSFVSFMTE 338
NARRK +SS +T TLFG S +L + T VS E
Sbjct: 388 NARRKGILSSSATITLFGGLQDSLGDSDLREMLFDVITHSCHCYGNFAWHYGVLVSAGDE 447
Query: 337 SLEGSGQSSKTMVIADGPSGLSSGITLTIDETTCSHPSSLSAITCSLTSRTGDSSSPS 164
G + V + S ++L+ T P S A+ S++S S +PS
Sbjct: 448 CDVGIIITPSQAVTQSHVGSIRSSVSLSEVPTILPSPVSSVAVQASVSSSVLASVNPS 505
>SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 818
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +1
Query: 163 CWAMKSHRFCSSNCT*SLTKKRDGCKSSRQWST*YHSTIRWDRRR 297
CW F C + K +DG WST Y +R R R
Sbjct: 204 CWGTTEETFAKHGCMDNCHKGKDGLNIGGDWST-YVYMLRKSRGR 247
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +1
Query: 163 CWAMKSHRFCSSNCT*SLTKKRDGCKSSRQWST*YHSTIRWDRRR 297
CW F C + K +DG WST Y +R R R
Sbjct: 350 CWGTTEETFAKHGCMDNCHKGKDGLNIGGDWST-YVYMLRKSRGR 393
>SB_21625| Best HMM Match : VAR1 (HMM E-Value=6.3)
Length = 269
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 209 HVQFDEQNR*LFIAQHRYHLFQEKDAQKSKSYSTKLQYYKTDFKSLE 69
H+Q+ + N H Q + A + YST +QY+K + SL+
Sbjct: 109 HIQYHKYNENSLQHTHTVPQVQRELATSTYPYSTHIQYHKYNENSLQ 155
>SB_7889| Best HMM Match : VWC (HMM E-Value=2.6)
Length = 203
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 332 QRLCHKANETVPAVEATCTLERPRREDETQYVRCP 436
QR+ + VP E+TCT +RP D+ VR P
Sbjct: 42 QRVAYHEGPAVP--ESTCTCKRPHCVDKAMSVRKP 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,016,290
Number of Sequences: 59808
Number of extensions: 433114
Number of successful extensions: 1285
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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