Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2152
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 335 RLCHKANETVPAVEATCTLERPRREDETQYVRCPRVYC 448
           +LC K   +  +++     +   R++E + V C RVYC
Sbjct: 9   QLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYC 46


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 494 LLGEYSDAVRARQFLGNTPED 432
           LLG   DA R+ +F    PED
Sbjct: 24  LLGRTVDAQRSLEFFDLLPED 44


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 437 EDNAHIAFHLHVEGVRECTL 378
           E N H+A H   +GV   T+
Sbjct: 722 ERNKHVALHCQAQGVPTPTI 741


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 437 EDNAHIAFHLHVEGVRECTL 378
           E N H+A H   +GV   T+
Sbjct: 718 ERNKHVALHCQAQGVPTPTI 737


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,333
Number of Sequences: 438
Number of extensions: 3186
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)