Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2151
         (923 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0966 - 33143383-33143464,33143946-33144087,33144136-331441...    29   5.2  
03_05_0499 + 24940443-24940994                                         28   9.1  

>02_05_0966 -
           33143383-33143464,33143946-33144087,33144136-33144163,
           33144453-33144631,33144776-33144866,33145643-33145951
          Length = 276

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 14  GSTAVAAALELVDPPGCRNSAAADPSPPXXXXXXXXXXC-LLKS 142
           G+ AVAA  E+    GC    A  PSPP          C LLKS
Sbjct: 67  GADAVAANPEVGGSDGCDEEGAPPPSPPSEADYETDELCDLLKS 110


>03_05_0499 + 24940443-24940994
          Length = 183

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 23  AVAAALELVDPPGCRNSAAADPSPP 97
           AV ++L  +  PGCR   AA P PP
Sbjct: 135 AVLSSLPPLPNPGCRRGRAAPPCPP 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,171,928
Number of Sequences: 37544
Number of extensions: 142744
Number of successful extensions: 239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)