Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2151
         (923 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   3.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.0  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   3.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   9.0  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 NKSSKTKQSFNHLTNRTIIFKLTCCYSF*DRDCS 287
           N+S K   S N L NRT  F+ T      +R CS
Sbjct: 205 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCS 238


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 NKSSKTKQSFNHLTNRTIIFKLTCCYSF*DRDCS 287
           N+S K   S N L NRT  F+ T      +R CS
Sbjct: 194 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCS 227


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 NKSSKTKQSFNHLTNRTIIFKLTCCYSF*DRDCS 287
           N+S K   S N L NRT  F+ T      +R CS
Sbjct: 210 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCS 243


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 NKSSKTKQSFNHLTNRTIIFKLTCCYSF*DRDCS 287
           N+S K   S N L NRT  F+ T      +R CS
Sbjct: 205 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCS 238


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 NKSSKTKQSFNHLTNRTIIFKLTCCYSF*DRDCS 287
           N+S K   S N L NRT  F+ T      +R CS
Sbjct: 205 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCS 238


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 NKSSKTKQSFNHLTNRTIIFKLTCCYSF*DRDCS 287
           N+S K   S N L NRT  F+ T      +R CS
Sbjct: 205 NESKKYATSSNSLRNRTHDFQHTSSRYSRERRCS 238


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 363 MXSNWVLMYILLCTSIKMXVILIS 434
           +  +WV + ILLCT+  + +  IS
Sbjct: 110 LCDSWVSLDILLCTASILSLCAIS 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,548
Number of Sequences: 438
Number of extensions: 2065
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)