Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2148
(325 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 66 9e-13
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 66 9e-13
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 64 5e-12
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 28 0.40
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 2.1
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 3.7
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 25 3.7
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 3.7
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 24 4.9
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 24 6.5
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 23 8.6
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo... 23 8.6
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 66.5 bits (155), Expect = 9e-13
Identities = 31/64 (48%), Positives = 46/64 (71%)
Frame = +1
Query: 67 VSKAELTCVYSALILVDDDVAATGEKISTILKAAAVYVEPYWPSLFSKALEGINVLDLIT 246
+S +EL YSALIL D+ + T +K+ ++ KAA V VEP W ++F+KALEG ++ +L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 247 NIGS 258
NIGS
Sbjct: 61 NIGS 64
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 66.5 bits (155), Expect = 9e-13
Identities = 31/64 (48%), Positives = 46/64 (71%)
Frame = +1
Query: 67 VSKAELTCVYSALILVDDDVAATGEKISTILKAAAVYVEPYWPSLFSKALEGINVLDLIT 246
+S +EL YSALIL D+ + T +K+ ++ KAA V VEP W ++F+KALEG ++ +L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 247 NIGS 258
NIGS
Sbjct: 61 NIGS 64
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 64.1 bits (149), Expect = 5e-12
Identities = 29/64 (45%), Positives = 45/64 (70%)
Frame = +1
Query: 67 VSKAELTCVYSALILVDDDVAATGEKISTILKAAAVYVEPYWPSLFSKALEGINVLDLIT 246
+S +EL Y+ALIL D+ + T +K+ ++ KA V VEP W ++F+KALEG ++ +L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 247 NIGS 258
NIGS
Sbjct: 61 NIGS 64
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 27.9 bits (59), Expect = 0.40
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +1
Query: 49 RSKLKMVSKAELTCVYSALILVD-DDV--AATGEKISTILKAAAVYVEPYWPSLFSKALE 219
R+ L+ + E S L+L + DV A + E+IS IL + Y +W AL
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISK-YKSSHWRIFSVSALT 161
Query: 220 GINVLDLITNIGSEV 264
G+N+ D I+ + +++
Sbjct: 162 GLNIKDAISWLANDL 176
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 2.1
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = -3
Query: 212 ALENRLGQYGSTYTAAAFKMVEIFSPVAATSSSTRMRAE*THVNSAFDTIFSFE 51
++E+ + + S+Y A+ +V I VA SSS+ +E +++++ F+ +FE
Sbjct: 338 SIEHAIKCFQSSYNASF--LVNIVGVVATLSSSSEENSEASNLSTLFEKSGNFE 389
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 31 GLRQLARSKLKMVSKAELTCVYSAL 105
G+ QL + ++SKA+L C Y L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 3.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 95 TLLSSWWMMMLPQLVRKFPPS*KRRLYM*SHIGQVCSPKPWKASMSLT 238
TLL S W + V K + R L + S++ C+ + W + SLT
Sbjct: 514 TLLESTWQYLPDPNVNKVTSADNRMLGLLSYLYFNCNLQRWDFTTSLT 561
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 3.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 181 LHIQPPLSRWWKFS 140
LH+Q L +WWK S
Sbjct: 439 LHVQEDLCKWWKES 452
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 24.2 bits (50), Expect = 4.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 238 GQGH*CLPRLWRTDL 194
G G CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 23.8 bits (49), Expect = 6.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 181 EPYWPSLFSKALEGINV 231
EPY +LFSK E +NV
Sbjct: 1239 EPYRMTLFSKGQEALNV 1255
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 23.4 bits (48), Expect = 8.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 183 LYIYSRRFQDGGNFLTSCGNI 121
LYIY + FQ+ ++ CG++
Sbjct: 485 LYIYVQSFQNANQTVSICGSL 505
>SPBC409.09c |mis13|cnl1|kinetochore protein
Mis13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 329
Score = 23.4 bits (48), Expect = 8.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 260 SEPMLVIRSRTLMPSKALENRLGQYGSTYTAA 165
SEP+ + + SKALE + +YG T A+
Sbjct: 105 SEPLRIKQLLLWASSKALEEQRKKYGETEEAS 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,677
Number of Sequences: 5004
Number of extensions: 24439
Number of successful extensions: 68
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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