Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2148
(325 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 71 2e-13
07_01_0738 + 5626062-5626862 30 0.48
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898... 28 1.9
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 28 1.9
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 27 2.6
10_08_0915 + 21539651-21540226,21540276-21541139 27 3.4
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 3.4
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 27 4.5
03_05_1048 - 29950860-29951396,29951810-29952676 26 5.9
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 26 7.8
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24... 26 7.8
05_05_0093 + 22336593-22337198,22338123-22339076 26 7.8
05_04_0215 - 19117335-19117390,19118051-19118426,19118861-191189... 26 7.8
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/64 (51%), Positives = 46/64 (71%)
Frame = +1
Query: 67 VSKAELTCVYSALILVDDDVAATGEKISTILKAAAVYVEPYWPSLFSKALEGINVLDLIT 246
+S +E+ C +ALIL DD + T EKI+T++KAA + VE YWP LF+K LE +V DLI
Sbjct: 1 MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60
Query: 247 NIGS 258
++GS
Sbjct: 61 SVGS 64
>07_01_0738 + 5626062-5626862
Length = 266
Score = 29.9 bits (64), Expect = 0.48
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 248 LVIRSRTLMPSKALENRLGQYGSTYTAAAFKMVEIFSPVAATSSST 111
L R RT++ K L+ + Q T++ A + P AATS+ST
Sbjct: 106 LASRIRTILTHKKLKKSMPQPTITFSTAVYHHARSTVPAAATSTST 151
>07_03_1604 -
28089032-28089079,28089161-28089371,28089484-28089853,
28090034-28090199
Length = 264
Score = 27.9 bits (59), Expect = 1.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 89 VFTLLSSWWMMMLPQ 133
+F+++SSWWM LPQ
Sbjct: 30 LFSIISSWWMNPLPQ 44
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 31 GLRQLARSKLKMVSKAELTCVYSALILVDDDVAATGEKIST 153
G+R+LA+ V+K + S +L+ +DVA TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 7 RACSLLS*GLRQLARSKLKMVSKAELTC-VYSALILVDDDVAATGEKISTILKAAAVYVE 183
R C L S R L L +V+ A L C ++S+L+ D+D E + I +V
Sbjct: 58 RICKLTSRRRRMLL---LLLVAAAVLFCFLFSSLVSKDEDAPPGIETMLGISDQVRSFVN 114
Query: 184 PYWPS 198
P W S
Sbjct: 115 PVWTS 119
>10_08_0915 + 21539651-21540226,21540276-21541139
Length = 479
Score = 27.1 bits (57), Expect = 3.4
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -3
Query: 233 RTLMPSKALENRLGQYGSTYTAAAFKMVEIFSPVAATSSSTRMRAE*THVNSAF---DTI 63
RTL+ + A+ LG+ S+ T + ++ E+ SP+ + + + S D +
Sbjct: 292 RTLLDAVAVSGALGRPVSSVTYSLGRLSELLSPIPLLPLAREREEDRRRMASLLSRGDVV 351
Query: 62 FSFERASCRRP*LKR 18
E +CR P L R
Sbjct: 352 VCPEGTTCREPYLLR 366
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 139 HQLRQHHHPPG*EQSKH 89
HQ R+HHHPP + H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 213 GFGEQTWPIW--LYIYSRRFQDGGNFLTSCG 127
G G+ +W +Y +S + QDG NF+ G
Sbjct: 627 GAGKGLMTVWHAMYSHSSKIQDGSNFIDETG 657
>03_05_1048 - 29950860-29951396,29951810-29952676
Length = 467
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -3
Query: 251 MLVIRSRTLMPSKALENRLGQYGSTYTAAAFKMVEIFSPVAATSSSTRMRAE*THVNSAF 72
+ + RTL+ L LG+ + T + ++ EI SP+ + A+ +
Sbjct: 261 LFICSHRTLLDPIFLSTALGRPITAVTYSVSRLSEILSPIRTVRLTRDRAADAAMIRRLL 320
Query: 71 ---DTIFSFERASCRRP*LKREQA 9
D + E +CR P L R A
Sbjct: 321 AEGDLVICPEGTTCREPFLLRFSA 344
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 187 MALHIQPPLSRWWKFSHQLRQHHHPP 110
+ LH +P L W +F +QH P
Sbjct: 4466 LVLHFEPYLMNWSEFDQLQKQHEENP 4491
>06_01_0025 -
244068-244177,244279-244333,244500-244527,244621-244691,
244829-244926,245069-245186,245573-245636,245744-245808,
245893-245928,246255-246311,246422-246691
Length = 323
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 211 LWRTDLANMALHIQPPLSRWWKFSHQLRQH 122
+W+TD H + L W F H+LRQH
Sbjct: 234 VWQTDCIARVSH-EDGLVVGWIFLHELRQH 262
>05_05_0093 + 22336593-22337198,22338123-22339076
Length = 519
Score = 25.8 bits (54), Expect = 7.8
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = -3
Query: 251 MLVIRSRTLMPSKALENRLGQYGSTYTAAAFKMVEIFSPVAATSSSTRMR----AE*THV 84
+ V RTLM L LG+ + T + ++ E+ SP+ T TR R A+
Sbjct: 307 LFVCTHRTLMDPVVLATVLGRRVAAVTYSISRLSEVLSPI-PTVRLTRDRGVDAAQMRAE 365
Query: 83 NSAFDTIFSFERASCRRP*LKREQA 9
S D E +CR P L R A
Sbjct: 366 LSRGDVAVCPEGTTCREPFLLRFSA 390
>05_04_0215 -
19117335-19117390,19118051-19118426,19118861-19118919,
19120455-19120712,19120853-19121059,19121201-19121351
Length = 368
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 204 EQTWPIWLYIYSRRFQDGGNFLTSCGN 124
E+ IW ++Y R+ + GG + GN
Sbjct: 149 EELKNIWQHVYRRKLRSGGRRAAAAGN 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,150,666
Number of Sequences: 37544
Number of extensions: 192211
Number of successful extensions: 534
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -