Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2148
         (325 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   8e-19
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        36   0.010
SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44)           28   1.5  
SB_86| Best HMM Match : PGK (HMM E-Value=0)                            27   4.6  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.1  
SB_14912| Best HMM Match : GED (HMM E-Value=0.24)                      26   6.1  
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)                   26   8.1  
SB_5878| Best HMM Match : Tyrosinase (HMM E-Value=0.33)                26   8.1  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 40/65 (61%), Positives = 51/65 (78%)
 Frame = +1

Query: 64  MVSKAELTCVYSALILVDDDVAATGEKISTILKAAAVYVEPYWPSLFSKALEGINVLDLI 243
           M S +EL CVYSALIL DDDVA T +KI T++KAA + VEP+WP LF+KAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 244 TNIGS 258
            + G+
Sbjct: 61  LSAGA 65


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 243 DQVKDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSCGNIIIHQDESR 97
           DQ+  I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44)
          Length = 348

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 207 GEQTWPIWLYIYSRRFQDGGNFLTSCGNIIIHQD 106
           G  TWP  + IY  RF   GN +  CG  +I+++
Sbjct: 134 GHGTWPWQVGIY--RFDHSGNQMQICGGALINRE 165


>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 169 PPLSRWWKFSHQLRQHHH 116
           PP  RWW++ H LRQ  H
Sbjct: 394 PP--RWWRYRHVLRQMGH 409


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -2

Query: 294  WGSTRGWSSTHFRADVGDQVKDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLT 136
            W S     + + + D+G +V  +      G  T   W+ +YS    D G+F T
Sbjct: 2086 WCSATSSQAEYLQVDLG-RVTRVTGIATQGSPTGDKWVKLYSVEQSDDGHFFT 2137


>SB_14912| Best HMM Match : GED (HMM E-Value=0.24)
          Length = 194

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 282 RGWSSTHFRADVGDQV 235
           RGW+   FR D GDQ+
Sbjct: 48  RGWALLEFRVDSGDQI 63


>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
          Length = 999

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 40  QLARSKLKMVSKAELTCVYSALILVDDDVAATGEKIS 150
           ++  S +K + + + TC     +L DDD+A T   ++
Sbjct: 745 RVVSSFVKSLEEGKATCSSGLAVLTDDDLATTSRPLT 781


>SB_5878| Best HMM Match : Tyrosinase (HMM E-Value=0.33)
          Length = 292

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
 Frame = -1

Query: 292 GLHQRLEQHTLQSRCW*SGQGH*CLPRLWRTDLANMAL---HIQPPLSRWWKFSHQLRQH 122
           GLH  +     +   W  G+G   L R +   L N       +Q P  R+  F  QLR  
Sbjct: 146 GLHMHVLDGPFREGSWTFGKGGKVLTRNFSGVLPNKVTVQRALQLPHKRFTDFEKQLRIF 205

Query: 121 HH 116
           HH
Sbjct: 206 HH 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,939,783
Number of Sequences: 59808
Number of extensions: 188426
Number of successful extensions: 410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)