Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2148
(325 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 93 3e-20
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 90 4e-19
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical pr... 27 3.1
AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical ... 27 3.1
AF003151-2|AAK18919.3| 277|Caenorhabditis elegans Prion-like-(q... 26 5.4
Z70307-1|CAA94334.1| 205|Caenorhabditis elegans Hypothetical pr... 26 7.2
U55363-8|AAA97966.1| 829|Caenorhabditis elegans Germinal center... 25 9.5
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 93.5 bits (222), Expect = 3e-20
Identities = 43/65 (66%), Positives = 53/65 (81%)
Frame = +1
Query: 64 MVSKAELTCVYSALILVDDDVAATGEKISTILKAAAVYVEPYWPSLFSKALEGINVLDLI 243
M S EL CVY+ALIL DD+VA TGEKI+T+LKAA V EPYWP LF+KALEG++V +LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 244 TNIGS 258
T++ S
Sbjct: 61 TSVSS 65
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 89.8 bits (213), Expect = 4e-19
Identities = 42/65 (64%), Positives = 52/65 (80%)
Frame = +1
Query: 64 MVSKAELTCVYSALILVDDDVAATGEKISTILKAAAVYVEPYWPSLFSKALEGINVLDLI 243
M S EL CVY+ALIL DD+VA TGEKI+T+LKAA V EP WP LF+KALEG++V +LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 244 TNIGS 258
T++ S
Sbjct: 61 TSVSS 65
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 88 CVYSALILVDDDVAATGEKISTILKAAAVYVEPYWPSLFSKALEGINVLDLITNIGS 258
C ++ L + DDD T + + +L+ V P + + A G NVL+ IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 167 AAFKMVEIFSPVAATSSSTRMRAE*THVNSAFDTIFS 57
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 167 AAFKMVEIFSPVAATSSSTRMRAE*THVNSAFDTIFS 57
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
>Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = -2
Query: 291 GSTRGWSSTHFRADVGDQVKDIDAFQGFGEQTWPIWLY 178
G+ +GW+ ++ V V++ + G G P+W +
Sbjct: 365 GANQGWTRYNYSLMVNQSVEEYNNSVGLGHVLTPVWTF 402
>AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = -2
Query: 291 GSTRGWSSTHFRADVGDQVKDIDAFQGFGEQTWPIWLY 178
G+ +GW+ ++ V V++ + G G P+W +
Sbjct: 365 GANQGWTRYNYSLMVNQSVEEYNNSVGLGHVLTPVWTF 402
>AF003151-2|AAK18919.3| 277|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 24
protein.
Length = 277
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 312 GCNRRGWGSTRGWSSTH 262
G N GWG+ WSS +
Sbjct: 149 GSNNNGWGNNNDWSSNY 165
>Z70307-1|CAA94334.1| 205|Caenorhabditis elegans Hypothetical
protein C39E9.1 protein.
Length = 205
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 233 RTLMPSKALENRLGQ-YGSTYTAAAFKMVEIFSPVAATS 120
R MP K+LE+R+G+ YT A F + ++ A+ +
Sbjct: 69 RKHMPKKSLESRVGENIYYRYTTAPFSGMNVYGGAASVA 107
>U55363-8|AAA97966.1| 829|Caenorhabditis elegans Germinal center
kinase family protein2 protein.
Length = 829
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 153 GGNFLTSCGNIIIHQDE 103
GG+ L CGN +IH D+
Sbjct: 394 GGDALLHCGNGVIHDDD 410
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,278,268
Number of Sequences: 27780
Number of extensions: 146946
Number of successful extensions: 332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -