Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2147
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   1.5  
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    26   2.6  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   4.5  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   5.9  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    24   7.8  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/62 (20%), Positives = 31/62 (50%)
 Frame = +2

Query: 152 RGVLINKYIFQYNVVGSFKLQKAYMLFVCIAKLLNVRSASEIFAQKIKFLIINKTTYINI 331
           +GV +     +Y +  +F      +LF+ +  L +    S +F+ K++ L+++     +I
Sbjct: 169 KGVQVLCDQLKYGLTNTFLSITIALLFLMVGWLCDTVGKSSLFSYKVRILLLDYGLVASI 228

Query: 332 VF 337
           +F
Sbjct: 229 IF 230


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 239 IAKLLNVRSASEIFAQKIKFLIINKTTYINIVFMHSLNKRFVLPS 373
           + K + V+    IFA + +F  ++ +TY+N   + S +  F  PS
Sbjct: 99  LTKFITVQDLQRIFATEGEFFYLDTSTYVNADLV-SQDPEFSKPS 142


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 306 IIKNLIF*ANISLALRTLSNLAIHT 232
           +IKNLI  +   LAL++L +L +H+
Sbjct: 614 VIKNLIDKSKYDLALQSLQSLRLHS 638


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 216 FCNLKLPTTLYWNMYLLIRTPLAAWVCTKVLLMIHK 109
           FC+    T+++ N Y +   P   W C K LL  H+
Sbjct: 213 FCD-NCNTSVHQNCYGIPFVPEGQWFCKKCLLAPHE 247


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 329 IVFMHSLNKRFVLPSHLI 382
           + F H L K F+ P HLI
Sbjct: 266 LFFRHKLQKAFLSPDHLI 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,541
Number of Sequences: 5004
Number of extensions: 33665
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)