Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2147
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         28   2.5  
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_9256| Best HMM Match : PsiB (HMM E-Value=4.9)                       27   4.4  
SB_52617| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_50148| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_41913| Best HMM Match : Rap_GAP (HMM E-Value=1.9e-06)               27   7.7  

>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 404 IIFWIHILLSETAKRTFYLMNA 339
           +I WI+I L   A+R FYL+N+
Sbjct: 692 VIMWIYICLLVYARRRFYLINS 713


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +2

Query: 296 FLIINKTTYINIVFMHSLNKRFVLPSHLIKCVS 394
           F+I++ T + ++  MHS+ K+FV+   +++ V+
Sbjct: 429 FVILHPTNHRDLEVMHSVEKKFVIWRSVLRAVT 461


>SB_9256| Best HMM Match : PsiB (HMM E-Value=4.9)
          Length = 259

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 228 SI*AFCNLKLPTTLYWNMYLLIRTPLA 148
           S+ + C+LKL T LYW    L R  +A
Sbjct: 182 SVTSTCSLKLTTALYWRTSSLTRLSIA 208


>SB_52617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 278 FAQKIKFLIINKTTYINI-VFMHSL-NKRFVLPSHLIK 385
           FA+ I+  +++KT  IN+ VF+    N  FV P  L+K
Sbjct: 30  FAEVIRSFVLSKTVTINVEVFISECENLAFVYPDPLVK 67


>SB_50148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 606

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 171 LLIRTPLAAWVCTKVLLMIHKEFINYAR*YINKTLTL 61
           LL      A++C K ++ +H  FIN AR  ++ T  L
Sbjct: 517 LLFNNGKEAFICAKRIVNVHCSFINIARNILSVTRLL 553


>SB_41913| Best HMM Match : Rap_GAP (HMM E-Value=1.9e-06)
          Length = 1035

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 65  VSVLLMYYRA*FINSLCIIKSTFVHTHAARGVLINKYIFQYNV 193
           V V+ +  +A   N  CI KS+F+HT     V ++   ++YNV
Sbjct: 374 VCVVFLEAKAIKFNPACI-KSSFLHTFVVVQVDVSSNPYEYNV 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,579,314
Number of Sequences: 59808
Number of extensions: 213416
Number of successful extensions: 341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)