Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2147
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    31   0.31 
Z48009-10|CAA88082.1|  331|Caenorhabditis elegans Hypothetical p...    28   2.2  
AC006777-4|AAK72310.1|  333|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z92831-5|CAJ58498.1|  247|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 161 LINKYIFQYNVVGSFKLQKAYM-LFVCIAKLLNVRSASEIFAQKIKFLIINKTTYINIVF 337
           +  K +FQ+  +  F   K +  + + I K + + S  +I+    KF++ N  T +NI  
Sbjct: 361 MTKKIMFQFPKISHFNFPKQFCRIIIRIKKQVKILSFHKIYC--FKFVLYNTRTIVNIDL 418

Query: 338 MHSLNKR 358
           + S++ R
Sbjct: 419 VQSVSSR 425


>Z48009-10|CAA88082.1|  331|Caenorhabditis elegans Hypothetical
           protein AH6.14 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +2

Query: 98  FINSLCIIKSTFVHTHAARGVLINKYIFQYN 190
           +I+ LCI+  TFV T+ A  +++NK +FQ++
Sbjct: 25  YIDLLCIV-ITFVTTYPAIQLVLNKSLFQWS 54


>AC006777-4|AAK72310.1|  333|Caenorhabditis elegans Hypothetical
           protein Y46H3D.7 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 210 NLKLPTTLYWNMYLLIRTPLAAWVCTKVLLMIHKEFINYAR 88
           +L L   LYW+  L  ++  ++ +C K+   I KE  NY R
Sbjct: 242 HLLLCALLYWDFGLENQSEESSEICLKLRSRIFKELSNYER 282


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 174 TYSNTMLWVVLNYRKLICSLYV*PNYSTSGVLARY 278
           TYS+T+L VVL +  L+  +    N   +GV+ +Y
Sbjct: 106 TYSDTVLSVVLGFYALLLLIAFASNILLAGVIKKY 140


>Z92831-5|CAJ58498.1|  247|Caenorhabditis elegans Hypothetical
           protein F22G12.8 protein.
          Length = 247

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +1

Query: 55  VFEGKRFI---NVLPSIIYKFFVYH*KYFCAH 141
           VF  KR++   NVL S+    F+Y    FCAH
Sbjct: 207 VFNNKRWLTIRNVLESLPMGLFIYALLLFCAH 238


>Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical
           protein C55A1.3 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 194 VGSFKLQKAYM-LFVCIAKLLNVRSASEIFAQKIKFLIINKTTYINIVFMHSLNKRFVLP 370
           +G++K    Y+ +F  I  LL+  +  EIF++   FLI   T    +  +  +  +F L 
Sbjct: 36  LGNYKYLMMYISIFEIIYSLLDFSTVPEIFSKDSAFLI---TIEKRLAVLPDIALQFALS 92

Query: 371 SHLIKC 388
              +KC
Sbjct: 93  EFPVKC 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,940,509
Number of Sequences: 27780
Number of extensions: 176025
Number of successful extensions: 292
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)