Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2146
         (430 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    26   0.13 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   0.70 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   2.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   3.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   3.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   5.0  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   5.0  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   5.0  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   5.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.6  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    20   8.7  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    20   8.7  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.13
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 131 RVLIMNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMHTQQTLRGHLT 310
           R  ++N +D L   +ETL   +   R+       A+ T NLE    IQ   +    GH+ 
Sbjct: 451 REFVVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKSNFIQKEVK--FLGHIL 508

Query: 311 KI 316
            I
Sbjct: 509 TI 510


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 199 RCEKSGMRHVAGPSHLKPGADRSHTD 276
           RC KSG++ +  PS L    D+   D
Sbjct: 56  RCTKSGLKQITCPSGLAFDIDKQTCD 81


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 247 KPGADRSHTDAHPTNLARSSHENLPHALGQQFQK 348
           +P  D SH   H T+L         H LG  + +
Sbjct: 126 QPPTDNSHVHHHQTSLLGKVEGAATHHLGSVYSR 159


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/48 (22%), Positives = 18/48 (37%)
 Frame = +3

Query: 282 PNKPCAVISRKSTPCTGATIPETWCRPFKMVTLSCGNTHPPNKVHPTP 425
           P  P    + + + CT  T+      P+ M      +  PP  V+  P
Sbjct: 241 PIYPAVTATVQLSTCTRTTLKNNRASPYPMQRPKSASLSPPPHVYNPP 288


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 209 KAACDTSLAQATSNLEPIGRIQMHTQQTLRGHLTKIYP 322
           K +  ++  + T+    I  IQ   Q  L  H+T  YP
Sbjct: 312 KPSSSSNQEKTTTESAKISVIQDDAQMRLNKHVTTTYP 349



 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 198 EMREKRHATRRWPKPP 245
           +MR  +H T  +PK P
Sbjct: 337 QMRLNKHVTTTYPKQP 352


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 416 VYLVGWVGVPTR*GYHLEWPTPSFW--NC 336
           V +VG++      G HL+W  P  W  NC
Sbjct: 738 VAVVGFLRRHNFKGLHLDWNYPVCWQSNC 766


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 388 PQDKVTILNGRHQVSGIVAP 329
           PQ +V  L+G H +SG+ AP
Sbjct: 278 PQQRV--LSGYHALSGLKAP 295



 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 146 NELDSLRQEAETLKNAIR 199
           +++ +LRQE ETLK+ ++
Sbjct: 344 DKIVALRQEQETLKSQVQ 361


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +3

Query: 246 QTWSRSVAYRCTPNKPCAVISRKSTPC 326
           +T  + ++Y C   K C +  R+   C
Sbjct: 112 RTVRKDLSYACREEKNCIIDKRQRNRC 138


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 140 IMNELDSLRQEAETLKNAI 196
           I N +DS+RQ ++T   A+
Sbjct: 194 INNIIDSIRQNSQTRNQAV 212


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 140 IMNELDSLRQEAETLKNAI 196
           I N +DS+RQ ++T   A+
Sbjct: 194 INNIIDSIRQNSQTRNQAV 212


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 235 PSHLKPGADRSHTDAHPT 288
           P H  P +D+ H   H T
Sbjct: 32  PRHFNPPSDKLHHPIHQT 49


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 116 HVEQTIDNRAPRTYNTQRTDPSVSNVPSI 30
           H+    D  AP TYN     P+  +V S+
Sbjct: 499 HIYTPEDLFAPNTYNRHLVAPNGDHVISL 527


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 397 WVFPQDKVT 371
           W +PQDK T
Sbjct: 144 WEYPQDKAT 152


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 300 VISRKSTPCTGATIPETWCR 359
           V++  ST C  ATI + W R
Sbjct: 309 VLAYYSTTCDIATILDFWVR 328


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,620
Number of Sequences: 336
Number of extensions: 2796
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)