Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2146
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 39 3e-04
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 32 0.033
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 32 0.043
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 31 0.076
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 29 0.31
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 29 0.40
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 28 0.53
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 28 0.53
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 28 0.53
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 28 0.71
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 28 0.71
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 28 0.71
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 0.93
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 27 1.2
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 27 1.2
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 1.6
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 1.6
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 1.6
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 26 2.2
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 2.9
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 3.8
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 3.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 3.8
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 3.8
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 3.8
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 5.0
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 25 5.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 5.0
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 5.0
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 5.0
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 5.0
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 6.6
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 24 8.7
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 24 8.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 8.7
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 24 8.7
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 24 8.7
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 39.1 bits (87), Expect = 3e-04
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 290 TLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
TLRGH+ +Y W +SR LVS+ QD L +W+
Sbjct: 426 TLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWD 459
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/34 (23%), Positives = 17/34 (50%)
Frame = +2
Query: 293 LRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWEH 394
L GH +++ + W + + + S D + +W H
Sbjct: 469 LPGHEDQVFAVDWSPDGQRVASGGADKAVRIWSH 502
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.033
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 167 QEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMHTQQTLRGHLTKIYPMHWGNNSR 346
Q + + +AI D T + T + I Q +TLRGH ++ + W +
Sbjct: 7 QHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKF 66
Query: 347 N--LVSAIQDGNLILW 388
L SA DG++I+W
Sbjct: 67 GTILASASYDGHVIVW 82
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 31.9 bits (69), Expect = 0.043
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 293 LRGHLTKIYPMHWGNNSRNLVSAIQDGNLILW 388
L+GH ++ + + N L SA DGN+ LW
Sbjct: 463 LQGHTNTVWALAFSPNGNTLASADNDGNVFLW 494
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +2
Query: 293 LRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
L GH ++ + W N L + +D ++ +WE
Sbjct: 374 LEGHENEVKCIAWSCNGNYLATCSRDKSVWIWE 406
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 31.1 bits (67), Expect = 0.076
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -3
Query: 116 HVEQTIDNRAPRTYNTQRTDPSVSNVPS 33
+V + +N +P Y+ RT+P+V+N+PS
Sbjct: 384 NVSRNSNNNSPEGYDNNRTNPTVNNLPS 411
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.31
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 287 QTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
Q L H + + W N L+S Q+G L+LW+
Sbjct: 256 QILHWHANPLNGLSWALNGEYLLSGGQEGVLVLWQ 290
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 28.7 bits (61), Expect = 0.40
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 272 QMHTQQTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
Q + L GH +IY + + + + LVS D + LW+
Sbjct: 365 QKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWD 404
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 287 QTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
+ L GH +Y + + + + LVS D + LWE
Sbjct: 452 EQLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWE 486
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 0.53
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 290 TLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
TL GH I + W S+ L SA D + +W+
Sbjct: 91 TLFGHYRGISQVKWATGSKYLASASDDKTIRIWD 124
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 28.3 bits (60), Expect = 0.53
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 266 RIQMHTQQTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
RI H TL+GH +++ + W ++ L S D + +W+
Sbjct: 291 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 332
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 28.3 bits (60), Expect = 0.53
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = -2
Query: 225 VSHAAFLASLIAFLRVSASWRRLSSSFM--INTRVTHS 118
++HA L+S++ +L+VS RR+++ + IN R+T S
Sbjct: 1120 INHADILSSILDYLQVSKDKRRMATHILGQINQRLTLS 1157
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 27.9 bits (59), Expect = 0.71
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 232 GPSHLKPGADRSHTDAHPTNLA---RSSHENLPHALGQQF 342
G + +P +R H D +A RS H NL HAL QF
Sbjct: 303 GQENFQPSMERFHVDPTGKYIALEGRSGHINLLHALTGQF 342
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.9 bits (59), Expect = 0.71
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 287 QTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWEHPPTQQGTP 418
+T+RGH IY + + S LVS D + W+ T P
Sbjct: 541 KTMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAWDVFKTNYNNP 584
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.9 bits (59), Expect = 0.71
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 287 QTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
+ L GH I + W + R L++A +D ILW+
Sbjct: 60 RVLTGHTRAIQSVCWSSCDRFLLTASRDWKCILWD 94
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 0.93
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 293 LRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
L GH+ + + W + R L+S D ++ILW+
Sbjct: 251 LIGHIDTVAYIRWSPDDRYLLSCSCDKSVILWD 283
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 284 QQTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
Q+ L GH + + W + L+S D LI+W+
Sbjct: 38 QKELTGHTGCVNTLDWSADGEFLLSGSDDTRLIVWD 73
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 266 RIQMHTQQTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
R H + L H ++ + W +N L S D L++W+
Sbjct: 361 RAPEHYFRVLTAHRQEVCGLEWNSNENLLASGGNDNALMVWD 402
Score = 26.2 bits (55), Expect = 2.2
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 290 TLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
TL+GH ++ + N N+V+ D L W+
Sbjct: 499 TLKGHTDRVLYLAMSPNGENIVTGAADETLRFWK 532
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 1.6
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +2
Query: 224 TSLAQATSNLEPIGRIQMHTQQTLRG----HLTKIYPMHWGNNSR-NLVSAIQDGNLILW 388
TS TS + + Q T+ RG H + +++ N+S NLVS +DG++I W
Sbjct: 197 TSSGDQTSKVFDLSTQQCITRLGRRGVDGYHSHSVKQVNFCNDSPYNLVSCSRDGSIIFW 256
Query: 389 E 391
+
Sbjct: 257 D 257
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/56 (21%), Positives = 25/56 (44%)
Frame = +2
Query: 242 TSNLEPIGRIQMHTQQTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWEHPPTQQ 409
T+ L + I+ L GH + + + + + + +DG L +W++ P Q
Sbjct: 169 TARLHSVDPIEGFHPCALTGHKNTVVSGFFSKDQQTIYTVSKDGALFVWKYSPLFQ 224
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 293 LRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWEHPPTQQG 412
L GH + + W ++S+ D ++I+WE P T G
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWE-PDTNTG 302
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 224 TSLAQATSNLEPIGRIQMHTQQTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
T A AT N+ + ++ L+GH ++ + +S LV+A D LWE
Sbjct: 232 TCSADATVNIWSTEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWE 287
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 226 VAGPSHLKPGADRSHTDAHPTNLARSSHENLPHALGQQ 339
V+ SHLKP AD+ + T+ ++ S + L +Q
Sbjct: 874 VSNDSHLKPDADKKSVSSELTHASKPSLDEKTMQLAKQ 911
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 290 TLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
TL GH + + M + L S D ++I+W+
Sbjct: 99 TLNGHKSAVTTMDFDKMGTRLASGSMDTDIIVWD 132
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 287 QTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILW 388
QTL GH I + + + +VSA DG + +W
Sbjct: 543 QTLEGHTGAILKLIYISQGTQVVSAAADGLVKVW 576
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.4 bits (53), Expect = 3.8
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 131 RVLIMNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMHTQQTLRGHLT 310
R+ ++N LDS + + IR A D + A S L IGR+ ++ + +L
Sbjct: 544 RLTVLNSLDSRFNKHLAQADKIRLLFIAINDENFAVRESALRIIGRLNVYNPAYVMPYLR 603
Query: 311 KI 316
KI
Sbjct: 604 KI 605
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 299 GHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
GH IY + + +N R +VS D LW+
Sbjct: 400 GHEQDIYSLDFSHNGRFIVSGSGDRTARLWD 430
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 287 QTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWEHPPTQ 406
+ L GH +Y + + +S L+S D + +WE T+
Sbjct: 478 ERLEGHKESVYSIAFSPDSSILLSGSLDKTIKVWELQATR 517
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 293 LRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
LRGHL + + + + + +V+A D L W+
Sbjct: 343 LRGHLASVNSVQYSSKTGLIVTASSDRTLRTWD 375
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 290 TLRGHLTKIYPMHWG-NNSRNLVSAIQDGNLILWE 391
TL GH ++Y + W ++ L S+ D + +W+
Sbjct: 320 TLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWD 354
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = +2
Query: 287 QTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWEH 394
+ ++ H +I + W + L S D NL +W++
Sbjct: 243 EMMKVHEQEICGLQWDRSLGQLASGGNDNNLFVWDY 278
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 293 LRGHLTKIYPMHWGNNSRNLVSAIQDGNLILW 388
L GH I + W +S+ +VS D ++I+W
Sbjct: 130 LLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 5.0
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +2
Query: 221 DTSLAQATSNLEPIGRI----QMHTQQTLRGHLTKIYPMHWGNNSRNLVSAIQDGNLILW 388
D SL + N + IGRI + L H+ +I M W N L ++ D + +W
Sbjct: 318 DGSLVSSGGN-DAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
Query: 389 E 391
+
Sbjct: 377 D 377
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 293 LRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWEHP 397
L GH ++ + + R LV+A DG + W+ P
Sbjct: 568 LWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLP 602
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 219 HAAFLASLIAFLRVSASWRRLSSSFMINTRV 127
H +S+IAF++ + WR L SS I V
Sbjct: 663 HDESSSSMIAFVKPNPVWRNLGSSLHIEKLV 693
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 293 LRGHLTKIYPMHWGNNSRNLVSAIQDGNLILW 388
LRGH+ ++Y + + + +SA D + +W
Sbjct: 613 LRGHVGRVYSVTINPSRQQCISAGTDAKIRIW 644
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 293 LRGHLTKIYPMHWGNNSRNLVSAIQDGNLILWE 391
L GHL +I + + +S L S D + LW+
Sbjct: 94 LGGHLAQINTIRYNEDSSILASGSFDSKVRLWD 126
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 253 GADRSHTDAHPTNLARSSHENLPHALGQQFQKLGVGHSRW*PYLVGTPT 399
G+D D L + + H +F KLG+ S PY++G PT
Sbjct: 113 GSDARGPDGRQVPLNLAGITEMYHTSDDKFDKLGLDDSLNYPYVLG-PT 160
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 113 VEQTIDNRAPRTYNTQRTDPSVSNV 39
+E+TI+N + N ++TD S S+V
Sbjct: 1695 LEETIENLNKQLSNPEKTDESTSSV 1719
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.2 bits (50), Expect = 8.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 143 MNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMHTQQTLR 298
MNE + E E LK+ + A ++ T+ +QAT N + ++ + +R
Sbjct: 430 MNEASTATSENEDLKDDLSLADLSSKKTANSQATENNNTPSKAKVKAESKVR 481
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 113 VEQTIDNRAPRTYNTQRTDPSVSNVPS 33
VEQ P YN Q+ D +V+N PS
Sbjct: 186 VEQAALYVKPPNYNQQKWDEAVANRPS 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,730
Number of Sequences: 5004
Number of extensions: 42549
Number of successful extensions: 169
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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