Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2143
         (434 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   1.7  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   5.1  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   5.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   6.7  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 369 SVCLMLDWVGSIAKPGAKLFR*DGKELWVWFIDGVVEHFE*ASLSSFVIVFQ 214
           SVC    W+   +K    L     +E++   I  +VE  +  S++S V+ ++
Sbjct: 334 SVCFYGSWINEESKLSLDLLSYVPREVYNKEISRLVETLKFQSITSAVVTYE 385


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 326 GFAMDPTQSNIKHTDGAIQ 382
           G AMD  + N KH  G  Q
Sbjct: 182 GVAMDCLKGNAKHWTGIFQ 200


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 410 LDWVNHFHHF 381
           LD +NHF HF
Sbjct: 478 LDVINHFPHF 487


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 257 ILSKRLLAHL*SCFSK 210
           ++ +RLL HL SC ++
Sbjct: 130 VVKRRLLQHLASCLNQ 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,696
Number of Sequences: 336
Number of extensions: 1633
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)