Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2143
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 0.94
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 1.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 1.2
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 2.2
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 2.2
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 2.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 2.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 2.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 24 8.8
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 24 8.8
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 24 8.8
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 0.94
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 266 TPSMNQTHNSLP-SYLNNLAPGFAMDPT-QSNIKHTDGAIQNDENDLPNQETPQSQ 427
T S+NQ P S A F P+ SN++ +G+I N + +P Q P ++
Sbjct: 728 TASINQQQQPQPQSQQQQQASQFPQAPSVSSNVRPINGSIPNAQPSVPGQAQPAAK 783
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 181 KIYESCFGSNLLKH 222
KIYESCF S LL+H
Sbjct: 744 KIYESCFLSTLLQH 757
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 197 VSVLIY*NTITNELRDAYSKCSTTPSMNQTHNSLPSYLNNLAPGFAM 337
VS+ +T T++ ++A K +T+ N+ N+LPS + P F++
Sbjct: 328 VSIFSIQSTNTDKSQEASIKGATSIDDNEFFNNLPSIAGSQEPSFSL 374
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 278 NQTHNSLPSYLNNLAPGFAMDPTQSNI 358
N T N+LPSY NLA A+ P ++I
Sbjct: 403 NPTVNNLPSYPTNLARPKAIKPMPTSI 429
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 260 STTPSMNQTHNSLPSYLNNLAPGFAMDPT--QSNIKHTDGAIQNDENDL 400
++TP T +S P ++ PGF D T QSN D E DL
Sbjct: 1216 TSTPQAMLTKDSTPLSSDSATPGFERDSTEEQSNTNDMDEDRSELEEDL 1264
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 187 YESCFGSNLLKHDHK*AKRRLLKMFNNAIYEPN 285
+ES +L D K AKRR +K N EPN
Sbjct: 28 FESLSTGDLTNLDEKTAKRRTVKGCKNGTSEPN 60
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 2.2
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +2
Query: 200 SVLIY*NTITNELRDAYSKCSTTPSMNQTHNSLPSYLNNLAPGFAMDPTQSNIKHTDGAI 379
+VL + +TITN A + T S+N NS Y N+ + T S + ++
Sbjct: 3829 TVLSFDSTITNSFTTASTSIMKTTSLNS--NSYKWY-NSTTQSVYYNATSSTVPWSNSTF 3885
Query: 380 QNDENDLPNQ 409
+N N + ++
Sbjct: 3886 RNTSNTMTSR 3895
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 2.9
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 251 SKCSTTPSMNQTHNSLPSYLN-NLAPGFAMDPTQSNIKHTDGAIQNDENDLPNQETP 418
S ST+P T ++ + +N N+ + T K TD I + LP+ TP
Sbjct: 258 SSASTSPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTP 314
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 325 WLRYGSDPVQHQAH 366
WLR GS PV+ Q H
Sbjct: 859 WLRRGSFPVEEQEH 872
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 304 LPE*LGAWLRYGSDPVQHQAHRWRY 378
L E +GA + DP + HRWRY
Sbjct: 286 LKEAVGADISIYPDPKRTLQHRWRY 310
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 260 STTPSMNQTHNSLPSYLNNLAP 325
S P +N TH+ LPS LAP
Sbjct: 786 SKFPIVNSTHHLLPSPQGELAP 807
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,568,931
Number of Sequences: 5004
Number of extensions: 28712
Number of successful extensions: 82
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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