Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2143
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302...    29   1.6  
12_01_0760 + 6910325-6910558,6911305-6911455,6911949-6912115,691...    28   2.9  
08_02_0238 + 14665813-14668798,14669088-14669125                       28   2.9  
04_04_1383 - 33144047-33144603,33145554-33147129                       28   2.9  
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819...    27   6.6  
01_07_0030 + 40601063-40601182,40601684-40602116,40602217-406023...    27   8.7  
01_02_0080 + 10933064-10933945                                         27   8.7  

>12_01_0386 +
           3023431-3023522,3023951-3024097,3024227-3024308,
           3024801-3024842,3024930-3024989,3025430-3027109,
           3027239-3027340,3027461-3027604,3027704-3027829,
           3027933-3028100
          Length = 880

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 218 NTITNELRDAYSKCSTTPSMNQTHNSLPSYLNNLAPGFAMDPTQSN 355
           N  TNE+ D+ +  ST    N   + +    N     F MDP+  N
Sbjct: 433 NKKTNEVNDSSAAVSTQDVKNMDRHKILDISNERTSSFVMDPSTEN 478


>12_01_0760 +
           6910325-6910558,6911305-6911455,6911949-6912115,
           6912227-6912309,6912395-6912773
          Length = 337

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 236 LRDAYSKCSTTPSMNQTHNSLPSYLNNLAPGFAMDPTQSNIKHTD 370
           +++ Y  C        TH+ LPSY+ +  PG  +     + K  D
Sbjct: 47  VKNLYVSCDPYMRNRMTHHELPSYIPDFVPGEVISSGHLDFKAGD 91


>08_02_0238 + 14665813-14668798,14669088-14669125
          Length = 1007

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 185 STKAVSVLIY*NTITNELRDAYSKCSTTPSMNQTHNSL 298
           ST  VSV++  NT+T  +    + CS+   +N   N+L
Sbjct: 212 STSLVSVVLANNTLTGPIPSVLANCSSLQVLNLVSNNL 249


>04_04_1383 - 33144047-33144603,33145554-33147129
          Length = 710

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 326 GFAMDPTQSNIKHTDGAIQNDENDLPNQETPQSQKV 433
           G A  P QS     DG  Q D+  LP+  TP+S+K+
Sbjct: 294 GSAAPPVQSAAATGDGP-QRDDISLPDSSTPRSRKL 328


>05_05_0127 -
           22580720-22580808,22580936-22580987,22581703-22581908,
           22582019-22582152,22582239-22582369,22583333-22583392,
           22583615-22583755,22583880-22584347,22584524-22584686,
           22585373-22585476,22585755-22585853,22586177-22586281,
           22586516-22586596,22587168-22587986,22588497-22588553
          Length = 902

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 212 Y*NTITNELRDAYSKCSTTPSMNQTHNSLPSYLNNLAPGFAMDP 343
           Y ++ TN ++ + S  + + S  Q +N  P Y N+  P  A DP
Sbjct: 207 YPSSNTNTVQHSISVPTNSFSYQQQYNQWPYYYNHTVPNPAGDP 250


>01_07_0030 +
           40601063-40601182,40601684-40602116,40602217-40602326,
           40602506-40602550
          Length = 235

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 227 TNELRDAYSKCSTTPSMNQTHNSLPS--YLNNLAPGFAMDPTQSNIKHTDGAIQNDENDL 400
           +N  + A    ST PS N T NSL    +L +  P +  DP  + ++  +G +   E  +
Sbjct: 53  SNPAQGAAPLASTNPSTNITDNSLSETYHLVSRPPPYDTDPRYARVQR-EGLVSRREKSI 111


>01_02_0080 + 10933064-10933945
          Length = 293

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 139 DGSDSKFMKDYAMLKIYESCFGSNL 213
           DG+DS  + D+ M    ++C+ SNL
Sbjct: 260 DGADSSLLPDFQMADTGDNCWWSNL 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,374,714
Number of Sequences: 37544
Number of extensions: 188782
Number of successful extensions: 578
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)