Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2143
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_46924| Best HMM Match : WD40 (HMM E-Value=1.7)                      28   2.9  
SB_8290| Best HMM Match : WD40 (HMM E-Value=2)                         28   2.9  

>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = +2

Query: 221  TITNELRDAYSKCSTTPSM-NQTHNSLPSYLNNLAPGFAMDPTQSNIKHTDGAIQNDE-N 394
            +IT  L D+ +K  T  S+ NQ+  +  +   +   G  ++  ++NIK T+    N++ N
Sbjct: 2539 SITTALNDSPTKEGTIESVSNQSQANPNTEKKSQETGPDVNKVENNIK-TESCTANEQLN 2597

Query: 395  DLPNQETPQSQ 427
             L NQ+T Q Q
Sbjct: 2598 KLSNQQTQQQQ 2608


>SB_46924| Best HMM Match : WD40 (HMM E-Value=1.7)
          Length = 134

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 323 PGFAMDPTQSNIKHTDGAIQNDENDLPNQETPQSQKV 433
           P  A+D  QS ++H D  IQ     + N E P  ++V
Sbjct: 89  PTSAIDDNQSRLRHQDSHIQQPLTRVENLEAPDFKEV 125


>SB_8290| Best HMM Match : WD40 (HMM E-Value=2)
          Length = 233

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 323 PGFAMDPTQSNIKHTDGAIQNDENDLPNQETPQSQKV 433
           P  A+D  QS ++H D  IQ     + N E P  ++V
Sbjct: 188 PTSAIDDNQSRLRHQDSHIQQPLTRVENLEAPDFKEV 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,987,702
Number of Sequences: 59808
Number of extensions: 208552
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)