Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2143
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41993-1|AAO12433.1|  390|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.        27   7.8  
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo...    27   7.8  
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo...    27   7.8  
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo...    27   7.8  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U41993-1|AAO12433.1|  390|Caenorhabditis elegans Hypothetical
           protein F44A2.5b protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 332 AMDPTQSNIKHTDGAIQNDENDLPNQETPQSQK 430
           A +   S+ +H++G+++  E+ L ++ TP SQK
Sbjct: 100 ASNHVSSDDRHSNGSLKRTESSLSSESTPSSQK 132


>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 278 NQTHNSLPSYLNNLAPGFAMDPTQSNIKHTDGAIQNDENDLPNQETPQSQKV 433
           N   N L SYL     G   D  +S I   +    +DEN    +E P ++K+
Sbjct: 566 NADKNLLESYLKLHGAGAQQDSEESEISSAEEEASDDENS--GEEEPNTEKI 615


>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
          Length = 1379

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 218 NTITNELRDAYSKCSTTPSMNQTHNSLPSYLNNLAPGFAMDPTQSNIKHTDGAIQNDEND 397
           +T  + L  + +   T+ S   + +S  S  ++  P      T+ +   +DG  +NDE++
Sbjct: 787 HTAPDSLLPSPATRGTSSSGADSSHSRQSSASSAVPAVPARLTERDSIVSDGTSRNDESE 846

Query: 398 LPNQETP 418
           LP+   P
Sbjct: 847 LPDSADP 853


>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform c protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 218 NTITNELRDAYSKCSTTPSMNQTHNSLPSYLNNLAPGFAMDPTQSNIKHTDGAIQNDEND 397
           +T  + L  + +   T+ S   + +S  S  ++  P      T+ +   +DG  +NDE++
Sbjct: 751 HTAPDSLLPSPATRGTSSSGADSSHSRQSSASSAVPAVPARLTERDSIVSDGTSRNDESE 810

Query: 398 LPNQETP 418
           LP+   P
Sbjct: 811 LPDSADP 817


>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform a protein.
          Length = 1376

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 218 NTITNELRDAYSKCSTTPSMNQTHNSLPSYLNNLAPGFAMDPTQSNIKHTDGAIQNDEND 397
           +T  + L  + +   T+ S   + +S  S  ++  P      T+ +   +DG  +NDE++
Sbjct: 787 HTAPDSLLPSPATRGTSSSGADSSHSRQSSASSAVPAVPARLTERDSIVSDGTSRNDESE 846

Query: 398 LPNQETP 418
           LP+   P
Sbjct: 847 LPDSADP 853


>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform b protein.
          Length = 1379

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 218 NTITNELRDAYSKCSTTPSMNQTHNSLPSYLNNLAPGFAMDPTQSNIKHTDGAIQNDEND 397
           +T  + L  + +   T+ S   + +S  S  ++  P      T+ +   +DG  +NDE++
Sbjct: 787 HTAPDSLLPSPATRGTSSSGADSSHSRQSSASSAVPAVPARLTERDSIVSDGTSRNDESE 846

Query: 398 LPNQETP 418
           LP+   P
Sbjct: 847 LPDSADP 853


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 396 SFSSFCIAPSVCLMLDWVG-SIAKPGAKLFR*DG 298
           S +SF +   VC+ L WV  SIA  GA +F  +G
Sbjct: 412 SVTSFLVFVFVCITLTWVAVSIAYVGACIFGDEG 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,707,422
Number of Sequences: 27780
Number of extensions: 158534
Number of successful extensions: 350
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)