Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2141
         (421 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   0.52 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   4.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   4.9  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    20   8.5  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 0.52
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 170 Y*GRLFNITLRQIQT 214
           Y G++FN+T RQ++T
Sbjct: 389 YCGKIFNLTTRQVRT 403


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 89  LVCLFERPNLWSYWSDLKKYF 151
           + C   R +LW  W +  K F
Sbjct: 374 VACFLTRGDLWLSWEEGMKVF 394


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 383 P*HIDISGWGLFFRFFKGDNFVIHYFRETLTVSAGH 276
           P  I ++G+G F  F   DN  +       TV  G+
Sbjct: 243 PDTILVNGFGRFKHFVGADNSTVFVPTARFTVEQGY 278


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 359 TRLCLYVKVNLTITFFML 412
           T LCLY+ + +T+T + L
Sbjct: 289 TFLCLYLFLIITLTIYGL 306


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,932
Number of Sequences: 336
Number of extensions: 1448
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)