Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2141
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   2.7  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    26   2.7  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    26   2.7  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.6  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   8.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/45 (24%), Positives = 28/45 (62%)
 Frame = +1

Query: 118 LELLVRFKKIFQC*IAHLLRKAI*HHPKTNTNGASIKNVSKSGFF 252
           +++ V ++K+ +   +H++ K    HPK++TN + ++ +  + FF
Sbjct: 464 VKVRVSYQKLLK---SHVMNKLHMAHPKSHTNRSLLRQLKNTKFF 505


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 147 ISVLDSPFIEEGYLTSP*DKYKRSINKECF 236
           I+ L   + EE Y   P +K+++S+N++CF
Sbjct: 117 IAQLGGSYNEEKYYQPP-EKFEQSLNEKCF 145


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 284 AGHTAEAFKKEKKPDFETFFIDAPFVF 204
           A   A  + KEKKP ++   I+ P+V+
Sbjct: 173 AEEAAREYVKEKKPSYDICTINPPYVY 199


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 144 NISVLDSPFIEEGYLTSP*DKYKRSINKECFKIRFFFLF 260
           N+  L SPF+E+G    P +K +  + +  FK RF   F
Sbjct: 38  NLDHLGSPFVEKGKSVIPYEKSQIPVLRFIFK-RFILTF 75


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 362 GWGLFFRFFKGDNFVIHYFRETLTVSA 282
           GW L F FF   N++I  +++ L  SA
Sbjct: 450 GWSLLFVFFVSYNYIIDSYQK-LAASA 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,782
Number of Sequences: 5004
Number of extensions: 25932
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)