Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2141
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914...    29   1.5  
01_01_0186 + 1598046-1598234,1599215-1599277,1599359-1599448,159...    27   8.1  

>05_07_0004 +
           26990250-26990516,26990877-26990931,26991286-26991461,
           26991702-26991923,26992001-26992239,26992437-26992962,
           26993042-26993315,26993391-26994009,26994082-26994121,
           26994263-26994310,26994548-26994814,26994892-26995155,
           26995260-26995904
          Length = 1213

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 358 GGFFLDFLKGTILSYIILGKL*PF 287
           GGF L FLKG +L+ ++L  + PF
Sbjct: 179 GGFVLAFLKGWLLTLVMLSTIPPF 202


>01_01_0186 +
           1598046-1598234,1599215-1599277,1599359-1599448,
           1599968-1600093,1600583-1600726,1600845-1601255,
           1601283-1601364,1601403-1601491,1602250-1602471,
           1602552-1602827,1603116-1603253,1603772-1604077,
           1604203-1604421
          Length = 784

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 87  SWFVCLNALISGATGPI*KNISVLDSPFIEEGYLTS 194
           +W    N ++ G TG +  N+  LDS  ++  YLTS
Sbjct: 302 AWNSTFNLVLHGETGVVKFNLYELDSGGVKVTYLTS 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,819,789
Number of Sequences: 37544
Number of extensions: 143238
Number of successful extensions: 183
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)