Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2141
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.6  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   5.6  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   7.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 89  LVCLFERPNLWSYWSDLKKYF 151
           + C   R +LW  W +  K F
Sbjct: 378 VACFLTRGDLWISWEEGMKVF 398


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 240 IRFFFLFESFRCVPCGNG*SFPKIMYD 320
           ++FF LF     +   +  S PK++YD
Sbjct: 1   MKFFVLFAILIAIVHASCASVPKVVYD 27


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 338 FKGDNFVIHYFRE 300
           F G N + HYFR+
Sbjct: 28  FCGPNVIDHYFRD 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,413
Number of Sequences: 438
Number of extensions: 1493
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)