Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2139
(321 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 117 4e-28
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 115 2e-27
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 54 5e-09
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 29 0.17
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.30
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 0.70
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 1.6
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 1.6
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 26 1.6
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 1.6
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 1.6
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 1.6
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 25 2.8
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 25 3.8
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 24 5.0
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 24 5.0
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 24 6.6
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 24 6.6
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 24 6.6
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 24 6.6
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 23 8.7
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 23 8.7
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 117 bits (282), Expect = 4e-28
Identities = 51/83 (61%), Positives = 61/83 (73%)
Frame = +2
Query: 68 EFQTNLVPYPRIHFPLVTYAPIISAHNAYHEQLSFSYITNTCFYPTNQIVKCYPHHDKYM 247
EFQTNLVPYPRIHFPLVTYAPI+SA A+HE S ITN CF P NQ+VKC P +YM
Sbjct: 254 EFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYM 313
Query: 248 TCYMLYHNDFLPNDINSSITTIK 316
+LY D +P D+ +++TTIK
Sbjct: 314 ATCLLYRGDVIPRDVQAAVTTIK 336
Score = 26.2 bits (55), Expect = 1.2
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 13 AAITASLIFDCTLNVDLTRIPN*LGALPPYP 105
++ITASL F+ +LNVDL L PYP
Sbjct: 236 SSITASLRFEGSLNVDLAEFQT---NLVPYP 263
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 115 bits (276), Expect = 2e-27
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +2
Query: 68 EFQTNLVPYPRIHFPLVTYAPIISAHNAYHEQLSFSYITNTCFYPTNQIVKCYPHHDKYM 247
EFQTNLVPYPRIHFPLVTY+PI+SA A+HE S ITN CF P NQ+VKC P +YM
Sbjct: 258 EFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYM 317
Query: 248 TCYMLYHNDFLPNDINSSITTIKT 319
+LY D +P D+ +++T+IK+
Sbjct: 318 ATCLLYRGDVIPRDVQAAVTSIKS 341
Score = 24.6 bits (51), Expect = 3.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 13 AAITASLIFDCTLNVDLTRIPN*LGALPPYP 105
++ITASL F +LNVDL L PYP
Sbjct: 240 SSITASLRFAGSLNVDLNEFQT---NLVPYP 267
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 54.0 bits (124), Expect = 5e-09
Identities = 22/80 (27%), Positives = 44/80 (55%)
Frame = +2
Query: 80 NLVPYPRIHFPLVTYAPIISAHNAYHEQLSFSYITNTCFYPTNQIVKCYPHHDKYMTCYM 259
N+VP+PR+HF +V +AP+ + ++ + +S +T F N +V P H +Y+T
Sbjct: 256 NMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAA 315
Query: 260 LYHNDFLPNDINSSITTIKT 319
L+ +++ I +++T
Sbjct: 316 LFRGKVSMKEVDEQIRSVQT 335
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 29.1 bits (62), Expect = 0.17
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +2
Query: 80 NLVPYPRIHFPLVTYAPIISAHNAYHEQLSFSYITNT---CFYPTNQIVKCYPHHDK-YM 247
+L+P PR HF L +Y P + + + + + + P NQ+V P ++
Sbjct: 259 SLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFI 318
Query: 248 TCYMLYHNDFLPNDINSSITTIK 316
+ + + P D++ S+ I+
Sbjct: 319 SILDIIQGEADPADVHKSLLRIR 341
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 28.3 bits (60), Expect = 0.30
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 152 YHEQLSFSYITNTCFYPTNQIVKCYPHHDKYMTCYMLYHNDFLPN 286
YH FSY CF T ++C P+ Y C +Y +PN
Sbjct: 54 YHPNARFSYSPFCCFTDTLAYLRCEPYRG-YRKC--IYRKVKMPN 95
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 0.70
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 61 LTRIPN*LGALPPYPLPTGHIRTNHLCP 144
L+R+P L LPTG I TN CP
Sbjct: 176 LSRLPTPLPPPSSSSLPTGTISTNSFCP 203
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 287 RWVRSHYGTAYSKSCTCHDGGSISLFGW 204
+W R H Y+K C DGG + L W
Sbjct: 15 QWRRDHPFGFYAKPCKSSDGG-LDLMNW 41
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 251 CYMLYHNDFLPNDINS-SITTIKT 319
C ++YHN F P I + SI +I+T
Sbjct: 76 CVVVYHNKFFPRFIRTHSINSIRT 99
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 1.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 277 EVIMVQHIASHVLVMMGVAFHY 212
++I H H+ +++GVAFHY
Sbjct: 403 DIIGNSHQIWHIAIIVGVAFHY 424
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 251 CYMLYHNDFLPNDINS-SITTIKT 319
C ++YHN F P I + SI +I+T
Sbjct: 76 CVVVYHNKFFPRFIRTHSINSIRT 99
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 251 CYMLYHNDFLPNDINS-SITTIKT 319
C ++YHN F P I + SI +I+T
Sbjct: 76 CVVVYHNKFFPRFIRTHSINSIRT 99
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 251 CYMLYHNDFLPNDINS-SITTIKT 319
C ++YHN F P I + SI +I+T
Sbjct: 76 CVVVYHNKFFPRFIRTHSINSIRT 99
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 25.0 bits (52), Expect = 2.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 164 LSFSYITNTCFYPTNQIVKCYPHHDKYMTCYMLYHNDFLP 283
L+ SY+ F TNQ C+ + Y C DF+P
Sbjct: 12 LTISYLLYR-FPNTNQTKHCFQSYIDYFRCIKAKGEDFVP 50
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 24.6 bits (51), Expect = 3.8
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 113 LVTYAPIIS-AHNAYHEQLSFSYITNT 190
L TY P+ ++NAY +++F+ I+NT
Sbjct: 90 LDTYLPLFKKSNNAYPSKIAFNPISNT 116
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 24.2 bits (50), Expect = 5.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 133 DWCVCDQWEVDTGVRHQVSLEFW*GPHS 50
DW W + G R Q + E+W +S
Sbjct: 375 DWLASMSWNLSPGPRGQKAWEWWSASYS 402
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 5.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 316 FDGSDGRVYIVG*EVIMVQHIASHVLVMMGVAFHYLVGG 200
F+ S R+ I + +Q I H+ + VA HYL GG
Sbjct: 652 FNSSYSRLIIFSPDSPKIQSI--HIFKTLPVALHYLHGG 688
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 23.8 bits (49), Expect = 6.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 91 LPPYPLPTGHIRTNHLCP*C 150
+PP PLP+ +T H+ C
Sbjct: 26 IPPIPLPSRRYKTRHIDALC 45
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 23.8 bits (49), Expect = 6.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 147 LWAEMIGAYVTSGKW 103
+W E+ G+YV G W
Sbjct: 100 IWQELYGSYVWQGYW 114
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 23.8 bits (49), Expect = 6.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 65 PEFQTNLVPYPRIHFPLVT 121
PE +TN +P HFP T
Sbjct: 374 PENETNQIPTTEEHFPATT 392
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 23.8 bits (49), Expect = 6.6
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 110 PLVTYAPIISAHNAYHEQLSFSY 178
P T + ++ HNAY+++LS +
Sbjct: 1407 PCATISKAVTQHNAYNKKLSLLF 1429
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 23.4 bits (48), Expect = 8.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 185 NTCFYPTNQIVKC 223
+TCFY + +I+KC
Sbjct: 88 DTCFYCSRKIIKC 100
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 23.4 bits (48), Expect = 8.7
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +3
Query: 147 MPTMNSFPSPISQTHASI 200
+PT+NS PSP+++ ++
Sbjct: 67 VPTINSIPSPVTRPPVAV 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,520,776
Number of Sequences: 5004
Number of extensions: 32101
Number of successful extensions: 103
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -