Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2138
         (385 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.26 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.26 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.26 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.26 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.0  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   1.8  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   1.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   3.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   5.6  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    21   5.6  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   5.6  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    20   7.4  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +3

Query: 102 HGIYPTGAYHGDSDLQLERINVYYNEASGGKYV-PQHHPHPLATRHHGLCPPL 257
           H I      +G  + Q    NV  N    G Y  PQ H H     HH + PP+
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPI 105


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +3

Query: 102 HGIYPTGAYHGDSDLQLERINVYYNEASGGKYV-PQHHPHPLATRHHGLCPPL 257
           H I      +G  + Q    NV  N    G Y  PQ H H     HH + PP+
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPI 105


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +3

Query: 102 HGIYPTGAYHGDSDLQLERINVYYNEASGGKYV-PQHHPHPLATRHHGLCPPL 257
           H I      +G  + Q    NV  N    G Y  PQ H H     HH + PP+
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPI 105


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +3

Query: 102 HGIYPTGAYHGDSDLQLERINVYYNEASGGKYV-PQHHPHPLATRHHGLCPPL 257
           H I      +G  + Q    NV  N    G Y  PQ H H     HH + PP+
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPI 105


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 60   NQIGAKFWEIISDEHGIYPTGAYHGDSDLQLERINVYYNEA 182
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 221 TCNPAPWTLSASGPFTQIFPPDN 289
           TC PAP  +S SG F++   PD+
Sbjct: 156 TC-PAPGEVSNSGSFSRHAHPDD 177


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 221 TCNPAPWTLSASGPFTQIFPPDN 289
           TC PAP  +S SG F++   PD+
Sbjct: 156 TC-PAPGEVSNSGSFSRHAHPDD 177


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 274 LPSGQLHLQD 303
           LPSG+LH++D
Sbjct: 180 LPSGELHIRD 189


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 285 SGGKICVKGPEADRVHGAGLQVDEDGAGAR 196
           +GG +  + P   + +GA +QV + G   +
Sbjct: 15  NGGVVSAEHPHQHQHYGAAVQVPQGGGAVQ 44


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 285 SGGKICVKGPEADRVHGAGLQVDEDG 208
           +GG +  + P   + +GA +QV + G
Sbjct: 15  NGGVVSAEHPHQHQHYGAAVQVPQGG 40


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 92  LRRARHLPHRCLPWGL*LAVGAHQCILQ*SLRRQVR 199
           L   R   ++ LP+GL  AVG+    +   L  +VR
Sbjct: 416 LYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTEVR 451


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 213 PHPLATRHHGLCPP 254
           P  L  RHHG  PP
Sbjct: 21  PQRLRIRHHGDKPP 34


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 233 APWTLSASGPFTQ 271
           AP T   +GPFTQ
Sbjct: 265 APATTGIAGPFTQ 277


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 15  NKMREIVHIQAGQCGNQIGAKFWEI 89
           N+++  V I    C N   A+F+E+
Sbjct: 290 NEIKMFVKIVDASCRNFTAARFFEL 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,776
Number of Sequences: 336
Number of extensions: 2087
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)