Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2138
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 109 1e-25
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 62 2e-11
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 53 1e-08
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 47 1e-06
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 30 0.11
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 27 0.76
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 1.8
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 3.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 5.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 7.1
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|... 24 7.1
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 24 9.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 109 bits (262), Expect = 1e-25
Identities = 55/112 (49%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Frame = +3
Query: 21 MREIVHIQAGQCGNQIGAKFWEIISDEHGIYPTGAYHGDSDLQLERINVYYNEASGGKYV 200
MREIVHIQAGQCGNQ+GA FW I+DEHG+ G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 201 PQHHPHPLATRHHGLCPPLDXXXXXXXXXXXXXXXXXXXXNN-WAKGHYTRG 353
P+ L G + N WAKGHYT G
Sbjct: 61 PR---AVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEG 109
Score = 32.3 bits (70), Expect = 0.027
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 202 PSTILIHLQPGTMDSVRLWTFHTDLPSGQLHLQDN----PSSQATTGPRDTTHEGAELID 369
P +L+ L+PGTMD+V+ F G L DN S + EGAEL D
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKF------GNLFRPDNIIYGQSGAGNIWAKGHYTEGAELAD 114
Query: 370 SILNL 384
++L++
Sbjct: 115 AVLDV 119
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 62.5 bits (145), Expect = 2e-11
Identities = 25/61 (40%), Positives = 42/61 (68%)
Frame = +3
Query: 24 REIVHIQAGQCGNQIGAKFWEIISDEHGIYPTGAYHGDSDLQLERINVYYNEASGGKYVP 203
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 204 Q 206
+
Sbjct: 63 R 63
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 53.2 bits (122), Expect = 1e-08
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3
Query: 21 MREIVHIQAGQCGNQIGAKFWEIISDEHGIYPTGAYHGDSDLQLE--RINVYYNEASGGK 194
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 195 YVPQ 206
YVP+
Sbjct: 61 YVPR 64
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 46.8 bits (106), Expect = 1e-06
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +3
Query: 21 MREIVHIQAGQCGNQIGAKFWEIISDEHGIYPTG------AYHGDSDLQLERINVYYNEA 182
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 183 SGGKYVPQ 206
GK+VP+
Sbjct: 61 GQGKFVPR 68
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 30.3 bits (65), Expect = 0.11
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 191 QVRAPAPSSSTCNPAPWT--LSASGPFTQIFPP 283
Q+ P + TCNP P+ L S P Q+FPP
Sbjct: 110 QIVTPKSLNRTCNPVPFATRLLQSTPHRQLFPP 142
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 0.76
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 165 VYYNEASGGKYVPQHHPHPLATRHHGLCPPLD 260
VYYN A K H P+ + ++H L LD
Sbjct: 180 VYYNNAGQKKVFTAHTPYEVLSKHADLITELD 211
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 280 SGQLHLQDNPSSQATTGPRDTTHEGA 357
SG LH+Q GPRDT+ +
Sbjct: 524 SGDLHIQSGMPMNGRNGPRDTSRNNS 549
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.4 bits (53), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 206 APSSSTCNPAPW-TLSASGPF-TQIF 277
+PSSS+ NP W L +GPF T +F
Sbjct: 326 SPSSSSVNPLVWIVLLLTGPFLTSLF 351
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.6 bits (51), Expect = 5.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 212 SSSTCNPAPWTLSAS 256
SSST +PAPW AS
Sbjct: 417 SSSTSSPAPWAKPAS 431
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 203 PAPSSSTCNPAPWTLSAS 256
PA S++ NPAPW A+
Sbjct: 429 PASSAAPSNPAPWQQPAA 446
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 209 PSSSTCNPAPWTLSASGPFTQIFPPDNFI 295
P+S + NP +LS S P +Q P NF+
Sbjct: 74 PTSLSINPKKLSLSFSFPLSQKRPFPNFL 102
>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 166
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 236 PWTLSASGPFTQIFPPDNFIFKTIQAAKQ 322
P LSAS I+ P++ +F+T++A Q
Sbjct: 59 PSYLSASVEEGDIYSPNDLLFETVKAKNQ 87
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 23.8 bits (49), Expect = 9.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 66 IGAKFWEIISDEHGIYPTGAYHG 134
+GA W ++ DE G P+ G
Sbjct: 439 LGASIWALVEDEEGKIPSRGKKG 461
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,303
Number of Sequences: 5004
Number of extensions: 33195
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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